Analysis of interatomic Contacts of Structural Units in PDB entry:
6QUC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QUC entry

There are 2 chains in PDB entry 6QUC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 54	PRO 912
B	SER 54	ARG 509

There are 32 helices in PDB entry 6QUC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	111	115	Right-handed 310
Helix 2	AA2	A	132	135	Right-handed 310
Helix 3	AA3	A	174	177	Right-handed 310
Helix 4	AA4	A	229	234	Right-handed alpha
Helix 5	AA5	A	268	272	Right-handed 310
Helix 6	AA6	A	362	366	Right-handed 310
Helix 7	AA7	A	370	384	Right-handed alpha
Helix 8	AA8	A	397	408	Right-handed alpha
Helix 9	AA9	A	429	433	Right-handed 310
Helix 10	AB1	A	452	466	Right-handed alpha
Helix 11	AB2	A	490	506	Right-handed alpha
Helix 12	AB3	A	522	535	Right-handed alpha
Helix 13	AB4	A	545	556	Right-handed alpha
Helix 14	AB5	A	603	613	Right-handed alpha
Helix 15	AB6	A	665	675	Right-handed alpha
Helix 16	AB7	A	753	759	Right-handed 310
Helix 17	AB8	B	111	115	Right-handed 310
Helix 18	AB9	B	132	135	Right-handed 310
Helix 19	AC1	B	174	177	Right-handed 310
Helix 20	AC2	B	229	234	Right-handed alpha
Helix 21	AC3	B	268	272	Right-handed 310
Helix 22	AC4	B	362	366	Right-handed 310
Helix 23	AC5	B	370	384	Right-handed alpha
Helix 24	AC6	B	397	408	Right-handed alpha
Helix 25	AC7	B	429	433	Right-handed 310
Helix 26	AC8	B	452	466	Right-handed alpha
Helix 27	AC9	B	490	506	Right-handed alpha
Helix 28	AD1	B	522	535	Right-handed alpha
Helix 29	AD2	B	545	556	Right-handed alpha
Helix 30	AD3	B	603	613	Right-handed alpha
Helix 31	AD4	B	665	675	Right-handed alpha
Helix 32	AD5	B	753	759	Right-handed 310

There are 26 sheets in PDB entry 6QUC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	120	130	parallel
Strand 3	A	71	75	anti-parallel
Strand 4	A	92	94	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	120	130	parallel
Strand 3	A	181	191	anti-parallel
Strand 4	A	150	154	anti-parallel
Strand 5	A	157	162	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	208	213	anti-parallel
Strand 3	A	138	143	anti-parallel
Strand 4	A	169	172	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	226	first strand
Strand 2	A	237	248	anti-parallel
Strand 3	A	288	298	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	277	first strand
Strand 2	A	254	264	anti-parallel
Strand 3	A	281	283	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	277	first strand
Strand 2	A	254	264	anti-parallel
Strand 3	A	311	319	anti-parallel
Strand 4	A	322	331	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	339	first strand
Strand 2	A	343	346	anti-parallel
Strand 3	A	349	350	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	358	first strand
Strand 2	A	388	391	parallel
Strand 3	A	410	414	parallel
Strand 4	A	471	478	parallel
Strand 5	A	511	515	parallel
Strand 6	A	539	542	parallel
Strand 7	A	561	567	parallel
Strand 8	A	617	623	parallel
Strand 9	A	353	358	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	684	first strand
Strand 2	A	699	706	anti-parallel
Strand 3	A	760	765	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	724	730	first strand
Strand 2	A	710	717	anti-parallel
Strand 3	A	769	776	anti-parallel
Strand 4	A	793	795	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	732	735	first strand
Strand 2	A	741	744	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	807	first strand
Strand 2	A	819	827	anti-parallel
Strand 3	A	876	883	anti-parallel
Strand 4	A	849	855	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	811	813	first strand
Strand 2	A	902	909	parallel
Strand 3	A	888	895	anti-parallel
Strand 4	A	840	847	anti-parallel
Strand 5	A	869	871	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	120	130	parallel
Strand 3	B	71	75	anti-parallel
Strand 4	B	92	94	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	120	130	parallel
Strand 3	B	181	191	anti-parallel
Strand 4	B	150	154	anti-parallel
Strand 5	B	157	162	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	208	213	anti-parallel
Strand 3	B	138	143	anti-parallel
Strand 4	B	169	172	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	226	first strand
Strand 2	B	237	248	anti-parallel
Strand 3	B	288	298	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	277	first strand
Strand 2	B	254	264	anti-parallel
Strand 3	B	281	283	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	277	first strand
Strand 2	B	254	264	anti-parallel
Strand 3	B	311	319	anti-parallel
Strand 4	B	322	331	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	339	first strand
Strand 2	B	343	346	anti-parallel
Strand 3	B	349	350	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	358	first strand
Strand 2	B	388	391	parallel
Strand 3	B	410	414	parallel
Strand 4	B	471	478	parallel
Strand 5	B	511	515	parallel
Strand 6	B	539	542	parallel
Strand 7	B	561	567	parallel
Strand 8	B	617	623	parallel
Strand 9	B	353	358	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	684	first strand
Strand 2	B	699	706	anti-parallel
Strand 3	B	760	765	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	724	730	first strand
Strand 2	B	710	717	anti-parallel
Strand 3	B	769	776	anti-parallel
Strand 4	B	793	795	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	732	735	first strand
Strand 2	B	741	744	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	802	807	first strand
Strand 2	B	819	827	anti-parallel
Strand 3	B	876	883	anti-parallel
Strand 4	B	849	855	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	813	first strand
Strand 2	B	902	909	parallel
Strand 3	B	888	895	anti-parallel
Strand 4	B	840	847	anti-parallel
Strand 5	B	869	871	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QUC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QUC