Analysis of interatomic Contacts of Structural Units in PDB entry:
6QUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QUD entry

There is 1 chain in PDB entry 6QUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 56PRO 912
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6QUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
111 115Right-handed 310
Helix 2
AA2
A
131 135Right-handed 310
Helix 3
AA3
A
174 177Right-handed 310
Helix 4
AA4
A
229 234Right-handed alpha
Helix 5
AA5
A
268 272Right-handed 310
Helix 6
AA6
A
362 366Right-handed 310
Helix 7
AA7
A
370 384Right-handed alpha
Helix 8
AA8
A
397 408Right-handed alpha
Helix 9
AA9
A
429 433Right-handed 310
Helix 10
AB1
A
452 466Right-handed alpha
Helix 11
AB2
A
494 506Right-handed alpha
Helix 12
AB3
A
522 535Right-handed alpha
Helix 13
AB4
A
545 556Right-handed alpha
Helix 14
AB5
A
603 613Right-handed alpha
Helix 15
AB6
A
665 675Right-handed alpha
Helix 16
AB7
A
695 697Right-handed 310
Helix 17
AB8
A
753 759Right-handed 310
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There are 12 sheets in PDB entry 6QUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
208 213anti-parallel
Strand 3
A
138 143anti-parallel
Strand 4
A
169 172anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
71 75anti-parallel
Strand 3
A
120 130anti-parallel
Strand 4
A
181 191anti-parallel
Strand 5
A
150 154anti-parallel
Strand 6
A
157 162anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 226first strand
Strand 2
A
237 248anti-parallel
Strand 3
A
288 298anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Strand 2
A
254 264anti-parallel
Strand 3
A
281 283anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Strand 2
A
254 264anti-parallel
Strand 3
A
311 319anti-parallel
Strand 4
A
322 331anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 339first strand
Strand 2
A
343 346anti-parallel
Strand 3
A
349 350anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 357first strand
Strand 2
A
388 390parallel
Strand 3
A
410 414parallel
Strand 4
A
471 478parallel
Strand 5
A
511 515parallel
Strand 6
A
538 542parallel
Strand 7
A
561 567parallel
Strand 8
A
617 623parallel
Strand 9
A
353 357parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 684first strand
Strand 2
A
699 706anti-parallel
Strand 3
A
760 765anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 730first strand
Strand 2
A
710 717anti-parallel
Strand 3
A
769 776anti-parallel
Strand 4
A
793 795anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
732 735first strand
Strand 2
A
741 744anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
802 807first strand
Strand 2
A
819 827anti-parallel
Strand 3
A
876 883anti-parallel
Strand 4
A
849 855anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
811 813first strand
Strand 2
A
902 909parallel
Strand 3
A
888 895anti-parallel
Strand 4
A
840 847anti-parallel
Strand 5
A
869 871anti-parallel
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