Analysis of interatomic Contacts of Structural Units in PDB entry:
6QUJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QUJ entry

There are 4 chains in PDB entry 6QUJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 0LEU 64
B
 VAL 66THR 228
E
 GLY 0LEU 64
E
 VAL 66THR 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6QUJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
0 7Right-handed alpha
Helix 2
AA2
B
37 39Right-handed 310
Helix 3
AA3
B
56 61Right-handed 310
Helix 4
AA4
B
66 70Right-handed 310
Helix 5
AA5
B
73 79Right-handed 310
Helix 6
AA6
B
80 85Right-handed alpha
Helix 7
AA7
B
154 157Right-handed 310
Helix 8
AA8
E
1 8Right-handed alpha
Helix 9
AA9
E
56 61Right-handed 310
Helix 10
AB1
E
66 70Right-handed 310
Helix 11
AB2
E
73 79Right-handed 310
Helix 12
AB3
E
80 85Right-handed alpha
Helix 13
AB4
E
154 157Right-handed 310
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There are 2 sheets in PDB entry 6QUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 22first strand
Strand 2
B
25 36anti-parallel
Strand 3
B
41 48anti-parallel
Strand 4
B
215 225anti-parallel
Strand 5
B
197 206anti-parallel
Strand 6
B
146 153anti-parallel
Strand 7
B
158 168anti-parallel
Strand 8
B
174 185anti-parallel
Strand 9
B
90 98anti-parallel
Strand 10
B
103 113anti-parallel
Strand 11
B
116 126anti-parallel
Strand 12
B
12 22parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 22first strand
Strand 2
E
25 36anti-parallel
Strand 3
E
41 48anti-parallel
Strand 4
E
215 225anti-parallel
Strand 5
E
197 206anti-parallel
Strand 6
E
146 153anti-parallel
Strand 7
E
158 168anti-parallel
Strand 8
E
174 185anti-parallel
Strand 9
E
90 98anti-parallel
Strand 10
E
103 113anti-parallel
Strand 11
E
116 126anti-parallel
Strand 12
E
12 22parallel
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