Analysis of interatomic Contacts of Structural Units in PDB entry:
6QUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QUP entry

There are 2 chains in PDB entry 6QUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 36ASN 217
B
 MET 1LEU 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6QUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 75Right-handed alpha
Helix 2
AA2
A
77 79Right-handed 310
Helix 3
AA3
A
122 130Right-handed alpha
Helix 4
AA4
A
139 143Right-handed 310
Helix 5
AA5
A
175 183Right-handed alpha
Helix 6
AA6
A
186 194Right-handed alpha
Helix 7
AA7
A
195 198Right-handed 310
Helix 8
AA8
B
29 32Right-handed 310
Helix 9
AA9
B
74 76Right-handed 310
Helix 10
AB1
B
87 91Right-handed 310
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There are 5 sheets in PDB entry 6QUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
89 103anti-parallel
Strand 3
A
106 116anti-parallel
Strand 4
A
148 154anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
89 103anti-parallel
Strand 3
A
53 60anti-parallel
Strand 4
A
163 169parallel
Strand 5
A
209 215anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
19 27anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
112 116parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
34 40anti-parallel
Strand 5
B
47 53anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
112 116parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
107 108anti-parallel
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