Analysis of interatomic Contacts of Structural Units in PDB entry:
6QUY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QUY entry

There are 5 chains in PDB entry 6QUY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 441
C	MET 1	GLU 441
W	THR 634	ILE 783
H	MET 1	ALA 440
G	MET 1	ALA 440

There are 76 helices in PDB entry 6QUY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	27	Right-handed alpha
Helix 2	AA2	A	72	80	Right-handed alpha
Helix 3	AA3	A	102	106	Right-handed 310
Helix 4	AA4	A	114	126	Right-handed alpha
Helix 5	AA5	A	149	161	Right-handed alpha
Helix 6	AA6	A	187	195	Right-handed alpha
Helix 7	AA7	A	206	215	Right-handed alpha
Helix 8	AA8	A	223	239	Right-handed alpha
Helix 9	AA9	A	254	260	Right-handed alpha
Helix 10	AB1	A	289	294	Right-handed alpha
Helix 11	AB2	A	297	301	Right-handed 310
Helix 12	AB3	A	324	336	Right-handed alpha
Helix 13	AB4	A	384	401	Right-handed alpha
Helix 14	AB5	A	405	410	Right-handed alpha
Helix 15	AB6	A	416	437	Right-handed alpha
Helix 16	AB7	C	10	27	Right-handed alpha
Helix 17	AB8	C	72	79	Right-handed alpha
Helix 18	AB9	C	102	106	Right-handed 310
Helix 19	AC1	C	114	124	Right-handed alpha
Helix 20	AC2	C	149	161	Right-handed alpha
Helix 21	AC3	C	187	195	Right-handed alpha
Helix 22	AC4	C	206	216	Right-handed alpha
Helix 23	AC5	C	223	239	Right-handed alpha
Helix 24	AC6	C	239	244	Right-handed alpha
Helix 25	AC7	C	253	259	Right-handed alpha
Helix 26	AC8	C	278	282	Right-handed 310
Helix 27	AC9	C	289	296	Right-handed alpha
Helix 28	AD1	C	297	301	Right-handed 310
Helix 29	AD2	C	324	336	Right-handed alpha
Helix 30	AD3	C	384	397	Right-handed alpha
Helix 31	AD4	C	405	410	Right-handed alpha
Helix 32	AD5	C	416	419	Right-handed 310
Helix 33	AD6	C	420	437	Right-handed alpha
Helix 34	AD7	W	635	644	Right-handed alpha
Helix 35	AD8	W	653	662	Right-handed alpha
Helix 36	AD9	W	779	783	Right-handed 310
Helix 37	AE1	H	9	28	Right-handed alpha
Helix 38	AE2	H	43	51	Right-handed 310
Helix 39	AE3	H	57	59	Right-handed 310
Helix 40	AE4	H	72	81	Right-handed alpha
Helix 41	AE5	H	102	108	Right-handed alpha
Helix 42	AE6	H	115	129	Right-handed alpha
Helix 43	AE7	H	144	149	Right-handed alpha
Helix 44	AE8	H	149	161	Right-handed alpha
Helix 45	AE9	H	182	187	Right-handed alpha
Helix 46	AF1	H	187	195	Right-handed alpha
Helix 47	AF2	H	206	215	Right-handed alpha
Helix 48	AF3	H	223	226	Right-handed 310
Helix 49	AF4	H	227	240	Right-handed alpha
Helix 50	AF5	H	253	258	Right-handed alpha
Helix 51	AF6	H	279	283	Right-handed 310
Helix 52	AF7	H	287	296	Right-handed alpha
Helix 53	AF8	H	324	339	Right-handed alpha
Helix 54	AF9	H	384	401	Right-handed alpha
Helix 55	AG1	H	405	410	Right-handed alpha
Helix 56	AG2	H	416	432	Right-handed alpha
Helix 57	AG3	G	9	28	Right-handed alpha
Helix 58	AG4	G	40	47	Right-handed 310
Helix 59	AG5	G	48	51	Right-handed 310
Helix 60	AG6	G	57	59	Right-handed 310
Helix 61	AG7	G	72	81	Right-handed alpha
Helix 62	AG8	G	115	129	Right-handed alpha
Helix 63	AG9	G	144	149	Right-handed alpha
Helix 64	AH1	G	149	158	Right-handed alpha
Helix 65	AH2	G	182	187	Right-handed alpha
Helix 66	AH3	G	187	192	Right-handed alpha
Helix 67	AH4	G	206	215	Right-handed alpha
Helix 68	AH5	G	223	239	Right-handed alpha
Helix 69	AH6	G	240	242	Right-handed 310
Helix 70	AH7	G	253	258	Right-handed alpha
Helix 71	AH8	G	279	284	Right-handed 310
Helix 72	AH9	G	287	296	Right-handed alpha
Helix 73	AI1	G	324	339	Right-handed alpha
Helix 74	AI2	G	384	401	Right-handed alpha
Helix 75	AI3	G	405	410	Right-handed alpha
Helix 76	AI4	G	416	435	Right-handed alpha

There are 11 sheets in PDB entry 6QUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	65	68	parallel
Strand 3	A	3	8	parallel
Strand 4	A	132	140	parallel
Strand 5	A	165	172	parallel
Strand 6	A	200	205	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	314	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	317	321	anti-parallel
Strand 4	A	353	355	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	3	9	parallel
Strand 3	C	132	140	parallel
Strand 4	C	165	172	parallel
Strand 5	C	200	205	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	273	first strand
Strand 2	C	373	376	anti-parallel
Strand 3	C	320	321	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	314	first strand
Strand 2	C	380	381	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	685	691	first strand
Strand 2	W	672	677	anti-parallel
Strand 3	W	775	777	parallel
Strand 4	W	750	754	anti-parallel
Strand 5	W	761	763	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	92	94	first strand
Strand 2	H	65	69	parallel
Strand 3	H	3	8	parallel
Strand 4	H	132	139	parallel
Strand 5	H	165	171	parallel
Strand 6	H	200	204	parallel
Strand 7	H	267	273	parallel
Strand 8	H	375	379	anti-parallel
Strand 9	H	315	319	anti-parallel
Strand 10	H	351	354	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	55	first strand
Strand 2	H	61	63	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	93	94	first strand
Strand 2	G	65	69	parallel
Strand 3	G	3	8	parallel
Strand 4	G	132	139	parallel
Strand 5	G	165	171	parallel
Strand 6	G	200	204	parallel
Strand 7	G	267	273	parallel
Strand 8	G	374	379	anti-parallel
Strand 9	G	315	320	anti-parallel
Strand 10	G	351	355	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	55	first strand
Strand 2	G	61	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QUY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QUY