Analysis of interatomic Contacts of Structural Units in PDB entry:
6QV0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QV0 entry

There are 3 chains in PDB entry 6QV0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	PHE 569
B	THR 22	TYR 591
C	SER 1	MET 129

There are112 helices in PDB entry 6QV0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	10	Right-handed 310
Helix 2	AA2	A	11	42	Right-handed alpha
Helix 3	AA3	A	48	99	Right-handed alpha
Helix 4	AA4	A	100	107	Right-handed alpha
Helix 5	AA5	A	108	117	Right-handed alpha
Helix 6	AA6	A	117	134	Right-handed alpha
Helix 7	AA7	A	135	152	Right-handed alpha
Helix 8	AA8	A	154	156	Right-handed 310
Helix 9	AA9	A	157	162	Right-handed alpha
Helix 10	AB1	A	162	176	Right-handed alpha
Helix 11	AB2	A	176	200	Right-handed alpha
Helix 12	AB3	A	201	208	Right-handed alpha
Helix 13	AB4	A	210	264	Right-handed alpha
Helix 14	AB5	A	270	311	Right-handed alpha
Helix 15	AB6	A	371	378	Right-handed alpha
Helix 16	AB7	A	398	400	Right-handed 310
Helix 17	AB8	A	401	408	Right-handed alpha
Helix 18	AB9	A	423	428	Right-handed alpha
Helix 19	AC1	A	435	446	Right-handed alpha
Helix 20	AC2	A	448	455	Right-handed alpha
Helix 21	AC3	A	457	460	Right-handed 310
Helix 22	AC4	A	464	468	Right-handed 310
Helix 23	AC5	A	471	486	Right-handed alpha
Helix 24	AC6	A	501	516	Right-handed alpha
Helix 25	AC7	A	527	532	Right-handed alpha
Helix 26	AC8	A	550	558	Right-handed alpha
Helix 27	AC9	A	558	567	Right-handed alpha
Helix 28	AD1	B	23	30	Right-handed alpha
Helix 29	AD2	B	31	34	Right-handed 310
Helix 30	AD3	B	35	67	Right-handed alpha
Helix 31	AD4	B	75	121	Right-handed alpha
Helix 32	AD5	B	124	131	Right-handed alpha
Helix 33	AD6	B	132	142	Right-handed alpha
Helix 34	AD7	B	144	149	Right-handed 310
Helix 35	AD8	B	152	176	Right-handed alpha
Helix 36	AD9	B	176	185	Right-handed alpha
Helix 37	AE1	B	186	224	Right-handed alpha
Helix 38	AE2	B	225	232	Right-handed alpha
Helix 39	AE3	B	234	261	Right-handed alpha
Helix 40	AE4	B	262	287	Right-handed alpha
Helix 41	AE5	B	292	320	Right-handed alpha
Helix 42	AE6	B	320	335	Right-handed alpha
Helix 43	AE7	B	393	402	Right-handed alpha
Helix 44	AE8	B	423	430	Right-handed alpha
Helix 45	AE9	B	444	451	Right-handed alpha
Helix 46	AF1	B	457	468	Right-handed alpha
Helix 47	AF2	B	470	476	Right-handed alpha
Helix 48	AF3	B	479	483	Right-handed 310
Helix 49	AF4	B	486	490	Right-handed 310
Helix 50	AF5	B	493	508	Right-handed alpha
Helix 51	AF6	B	523	535	Right-handed alpha
Helix 52	AF7	B	552	556	Right-handed 310
Helix 53	AF8	B	572	579	Right-handed alpha
Helix 54	AF9	B	581	589	Right-handed alpha
Helix 55	AG1	C	2	6	Right-handed alpha
Helix 56	AG2	C	7	10	Right-handed 310
Helix 57	AG3	C	11	42	Right-handed alpha
Helix 58	AG4	C	48	99	Right-handed alpha
Helix 59	AG5	C	100	107	Right-handed alpha
Helix 60	AG6	C	108	117	Right-handed alpha
Helix 61	AG7	C	117	131	Right-handed alpha
Helix 62	AG8	C	135	152	Right-handed alpha
Helix 63	AG9	C	154	156	Right-handed 310
Helix 64	AH1	C	157	176	Right-handed alpha
Helix 65	AH2	C	176	200	Right-handed alpha
Helix 66	AH3	C	201	208	Right-handed alpha
Helix 67	AH4	C	210	234	Right-handed alpha
Helix 68	AH5	C	235	264	Right-handed alpha
Helix 69	AH6	C	270	311	Right-handed alpha
Helix 70	AH7	C	371	378	Right-handed alpha
Helix 71	AH8	C	398	400	Right-handed 310
Helix 72	AH9	C	401	408	Right-handed alpha
Helix 73	AI1	C	423	428	Right-handed alpha
Helix 74	AI2	C	435	446	Right-handed alpha
Helix 75	AI3	C	448	455	Right-handed alpha
Helix 76	AI4	C	457	460	Right-handed 310
Helix 77	AI5	C	464	468	Right-handed 310
Helix 78	AI6	C	471	486	Right-handed alpha
Helix 79	AI7	C	501	516	Right-handed alpha
Helix 80	AI8	C	527	532	Right-handed alpha
Helix 81	AI9	C	550	558	Right-handed alpha
Helix 82	AJ1	C	558	567	Right-handed alpha
Helix 83	AJ2	D	19	29	Right-handed alpha
Helix 84	AJ3	D	30	34	Right-handed 310
Helix 85	AJ4	D	35	67	Right-handed alpha
Helix 86	AJ5	D	72	74	Right-handed 310
Helix 87	AJ6	D	75	121	Right-handed alpha
Helix 88	AJ7	D	124	131	Right-handed alpha
Helix 89	AJ8	D	132	147	Right-handed alpha
Helix 90	AJ9	D	148	151	Right-handed 310
Helix 91	AK1	D	152	176	Right-handed alpha
Helix 92	AK2	D	176	185	Right-handed alpha
Helix 93	AK3	D	186	224	Right-handed alpha
Helix 94	AK4	D	225	232	Right-handed alpha
Helix 95	AK5	D	234	261	Right-handed alpha
Helix 96	AK6	D	262	287	Right-handed alpha
Helix 97	AK7	D	292	320	Right-handed alpha
Helix 98	AK8	D	320	335	Right-handed alpha
Helix 99	AK9	D	393	402	Right-handed alpha
Helix 100	AL1	D	423	430	Right-handed alpha
Helix 101	AL2	D	444	451	Right-handed alpha
Helix 102	AL3	D	457	468	Right-handed alpha
Helix 103	AL4	D	470	476	Right-handed alpha
Helix 104	AL5	D	479	483	Right-handed 310
Helix 105	AL6	D	486	490	Right-handed 310
Helix 106	AL7	D	493	508	Right-handed alpha
Helix 107	AL8	D	523	539	Right-handed alpha
Helix 108	AL9	D	552	556	Right-handed 310
Helix 109	AM1	D	572	579	Right-handed alpha
Helix 110	AM2	D	581	589	Right-handed alpha
Helix 111	AM3	E	87	91	Right-handed 310
Helix 112	AM4	F	87	91	Right-handed 310

There are 17 sheets in PDB entry 6QV0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	355	first strand
Strand 2	A	332	339	anti-parallel
Strand 3	A	387	392	anti-parallel
Strand 4	A	395	396	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	490	494	parallel
Strand 3	A	520	524	parallel
Strand 4	A	361	365	parallel
Strand 5	A	536	541	parallel
Strand 6	A	544	549	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	462	463	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	378	first strand
Strand 2	B	355	362	anti-parallel
Strand 3	B	409	414	anti-parallel
Strand 4	B	417	418	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	434	first strand
Strand 2	B	512	515	parallel
Strand 3	B	542	545	parallel
Strand 4	B	383	387	parallel
Strand 5	B	558	563	parallel
Strand 6	B	566	571	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	355	first strand
Strand 2	C	332	339	anti-parallel
Strand 3	C	387	392	anti-parallel
Strand 4	C	395	396	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	490	494	parallel
Strand 3	C	520	524	parallel
Strand 4	C	361	365	parallel
Strand 5	C	536	541	parallel
Strand 6	C	544	549	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	422	first strand
Strand 2	C	462	463	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	377	first strand
Strand 2	D	355	362	anti-parallel
Strand 3	D	409	414	anti-parallel
Strand 4	D	417	418	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	434	first strand
Strand 2	D	512	515	parallel
Strand 3	D	542	545	parallel
Strand 4	D	383	387	parallel
Strand 5	D	558	563	parallel
Strand 6	D	566	571	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	13	first strand
Strand 2	E	123	124	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	49	52	anti-parallel
Strand 3	E	31	39	anti-parallel
Strand 4	E	92	100	anti-parallel
Strand 5	E	114	115	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	49	52	anti-parallel
Strand 3	E	31	39	anti-parallel
Strand 4	E	92	100	anti-parallel
Strand 5	E	119	121	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	119	124	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	31	39	anti-parallel
Strand 5	F	46	52	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	119	124	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	112	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QV0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QV0