Analysis of interatomic Contacts of Structural Units in PDB entry:
6QV1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QV1 entry

There are 3 chains in PDB entry 6QV1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	GLY 570
B	THR 22	VAL 594
C	LYS 2	VAL 127

There are107 helices in PDB entry 6QV1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	8	Right-handed 310
Helix 2	AA2	A	11	31	Right-handed alpha
Helix 3	AA3	A	31	46	Right-handed alpha
Helix 4	AA4	A	47	99	Right-handed alpha
Helix 5	AA5	A	102	107	Right-handed alpha
Helix 6	AA6	A	108	133	Right-handed alpha
Helix 7	AA7	A	135	150	Right-handed alpha
Helix 8	AA8	A	155	162	Right-handed alpha
Helix 9	AA9	A	162	176	Right-handed alpha
Helix 10	AB1	A	176	200	Right-handed alpha
Helix 11	AB2	A	201	208	Right-handed alpha
Helix 12	AB3	A	210	264	Right-handed alpha
Helix 13	AB4	A	270	311	Right-handed alpha
Helix 14	AB5	A	371	377	Right-handed alpha
Helix 15	AB6	A	401	408	Right-handed alpha
Helix 16	AB7	A	423	428	Right-handed alpha
Helix 17	AB8	A	435	446	Right-handed alpha
Helix 18	AB9	A	448	453	Right-handed alpha
Helix 19	AC1	A	457	460	Right-handed 310
Helix 20	AC2	A	464	468	Right-handed 310
Helix 21	AC3	A	471	486	Right-handed alpha
Helix 22	AC4	A	501	515	Right-handed alpha
Helix 23	AC5	A	527	532	Right-handed alpha
Helix 24	AC6	A	550	555	Right-handed alpha
Helix 25	AC7	A	558	567	Right-handed alpha
Helix 26	AC8	B	23	29	Right-handed alpha
Helix 27	AC9	B	30	33	Right-handed 310
Helix 28	AD1	B	35	63	Right-handed alpha
Helix 29	AD2	B	64	69	Right-handed alpha
Helix 30	AD3	B	77	121	Right-handed alpha
Helix 31	AD4	B	124	129	Right-handed alpha
Helix 32	AD5	B	132	142	Right-handed alpha
Helix 33	AD6	B	145	149	Right-handed 310
Helix 34	AD7	B	152	176	Right-handed alpha
Helix 35	AD8	B	176	185	Right-handed alpha
Helix 36	AD9	B	186	224	Right-handed alpha
Helix 37	AE1	B	225	232	Right-handed alpha
Helix 38	AE2	B	234	261	Right-handed alpha
Helix 39	AE3	B	262	285	Right-handed alpha
Helix 40	AE4	B	292	320	Right-handed alpha
Helix 41	AE5	B	320	335	Right-handed alpha
Helix 42	AE6	B	393	402	Right-handed alpha
Helix 43	AE7	B	423	428	Right-handed alpha
Helix 44	AE8	B	444	450	Right-handed alpha
Helix 45	AE9	B	457	468	Right-handed alpha
Helix 46	AF1	B	470	475	Right-handed alpha
Helix 47	AF2	B	479	483	Right-handed 310
Helix 48	AF3	B	486	490	Right-handed 310
Helix 49	AF4	B	493	509	Right-handed alpha
Helix 50	AF5	B	523	539	Right-handed alpha
Helix 51	AF6	B	572	579	Right-handed alpha
Helix 52	AF7	B	581	589	Right-handed alpha
Helix 53	AF8	C	2	8	Right-handed 310
Helix 54	AF9	C	11	31	Right-handed alpha
Helix 55	AG1	C	31	46	Right-handed alpha
Helix 56	AG2	C	47	99	Right-handed alpha
Helix 57	AG3	C	102	107	Right-handed alpha
Helix 58	AG4	C	108	133	Right-handed alpha
Helix 59	AG5	C	135	150	Right-handed alpha
Helix 60	AG6	C	155	162	Right-handed alpha
Helix 61	AG7	C	162	176	Right-handed alpha
Helix 62	AG8	C	176	200	Right-handed alpha
Helix 63	AG9	C	201	208	Right-handed alpha
Helix 64	AH1	C	210	264	Right-handed alpha
Helix 65	AH2	C	271	311	Right-handed alpha
Helix 66	AH3	C	371	377	Right-handed alpha
Helix 67	AH4	C	401	408	Right-handed alpha
Helix 68	AH5	C	423	428	Right-handed alpha
Helix 69	AH6	C	435	446	Right-handed alpha
Helix 70	AH7	C	448	453	Right-handed alpha
Helix 71	AH8	C	457	460	Right-handed 310
Helix 72	AH9	C	464	468	Right-handed 310
Helix 73	AI1	C	471	486	Right-handed alpha
Helix 74	AI2	C	501	515	Right-handed alpha
Helix 75	AI3	C	550	555	Right-handed alpha
Helix 76	AI4	C	558	567	Right-handed alpha
Helix 77	AI5	D	23	29	Right-handed alpha
Helix 78	AI6	D	30	33	Right-handed 310
Helix 79	AI7	D	35	63	Right-handed alpha
Helix 80	AI8	D	64	69	Right-handed alpha
Helix 81	AI9	D	77	121	Right-handed alpha
Helix 82	AJ1	D	124	129	Right-handed alpha
Helix 83	AJ2	D	132	142	Right-handed alpha
Helix 84	AJ3	D	145	149	Right-handed 310
Helix 85	AJ4	D	152	176	Right-handed alpha
Helix 86	AJ5	D	176	185	Right-handed alpha
Helix 87	AJ6	D	186	224	Right-handed alpha
Helix 88	AJ7	D	225	232	Right-handed alpha
Helix 89	AJ8	D	234	261	Right-handed alpha
Helix 90	AJ9	D	262	285	Right-handed alpha
Helix 91	AK1	D	292	320	Right-handed alpha
Helix 92	AK2	D	320	335	Right-handed alpha
Helix 93	AK3	D	393	402	Right-handed alpha
Helix 94	AK4	D	423	428	Right-handed alpha
Helix 95	AK5	D	444	450	Right-handed alpha
Helix 96	AK6	D	457	468	Right-handed alpha
Helix 97	AK7	D	470	475	Right-handed alpha
Helix 98	AK8	D	479	483	Right-handed 310
Helix 99	AK9	D	486	490	Right-handed 310
Helix 100	AL1	D	493	509	Right-handed alpha
Helix 101	AL2	D	523	539	Right-handed alpha
Helix 102	AL3	D	572	579	Right-handed alpha
Helix 103	AL4	D	581	589	Right-handed alpha
Helix 104	AL5	E	28	32	Right-handed 310
Helix 105	AL6	E	86	90	Right-handed 310
Helix 106	AL7	F	28	32	Right-handed 310
Helix 107	AL8	F	86	90	Right-handed 310

There are 18 sheets in PDB entry 6QV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	332	339	anti-parallel
Strand 3	A	355	356	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	332	339	anti-parallel
Strand 3	A	387	392	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	490	494	parallel
Strand 3	A	520	524	parallel
Strand 4	A	362	365	parallel
Strand 5	A	536	541	parallel
Strand 6	A	544	549	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	462	463	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	378	first strand
Strand 2	B	355	362	anti-parallel
Strand 3	B	409	414	anti-parallel
Strand 4	B	417	418	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	433	first strand
Strand 2	B	512	516	parallel
Strand 3	B	542	546	parallel
Strand 4	B	383	387	parallel
Strand 5	B	558	563	parallel
Strand 6	B	566	571	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	352	first strand
Strand 2	C	332	339	anti-parallel
Strand 3	C	355	356	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	352	first strand
Strand 2	C	332	339	anti-parallel
Strand 3	C	387	392	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	490	494	parallel
Strand 3	C	520	524	parallel
Strand 4	C	362	365	parallel
Strand 5	C	536	541	parallel
Strand 6	C	544	549	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	422	first strand
Strand 2	C	462	463	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	378	first strand
Strand 2	D	355	362	anti-parallel
Strand 3	D	409	414	anti-parallel
Strand 4	D	417	418	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	433	first strand
Strand 2	D	512	516	parallel
Strand 3	D	542	546	parallel
Strand 4	D	383	387	parallel
Strand 5	D	558	563	parallel
Strand 6	D	566	571	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	8	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	77	83	anti-parallel
Strand 4	E	68	72	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	111	114	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	59	first strand
Strand 2	E	46	52	anti-parallel
Strand 3	E	34	39	anti-parallel
Strand 4	E	92	97	anti-parallel
Strand 5	E	104	105	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	8	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	77	83	anti-parallel
Strand 4	F	68	72	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	111	114	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	46	51	anti-parallel
Strand 3	F	34	39	anti-parallel
Strand 4	F	92	97	anti-parallel
Strand 5	F	104	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QV1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QV1