Analysis of interatomic Contacts of Structural Units in PDB entry:
6QV2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QV2 entry

There are 3 chains in PDB entry 6QV2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	PHE 569
B	THR 22	TYR 591
C	LYS 2	LEU 130

There are103 helices in PDB entry 6QV2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed 310
Helix 2	AA2	A	11	31	Right-handed alpha
Helix 3	AA3	A	31	42	Right-handed alpha
Helix 4	AA4	A	51	57	Right-handed alpha
Helix 5	AA5	A	57	97	Right-handed alpha
Helix 6	AA6	A	102	107	Right-handed alpha
Helix 7	AA7	A	110	117	Right-handed alpha
Helix 8	AA8	A	117	133	Right-handed alpha
Helix 9	AA9	A	135	152	Right-handed alpha
Helix 10	AB1	A	153	158	Right-handed 310
Helix 11	AB2	A	162	200	Right-handed alpha
Helix 12	AB3	A	201	208	Right-handed alpha
Helix 13	AB4	A	210	262	Right-handed alpha
Helix 14	AB5	A	268	311	Right-handed alpha
Helix 15	AB6	A	372	377	Right-handed alpha
Helix 16	AB7	A	401	406	Right-handed alpha
Helix 17	AB8	A	422	428	Right-handed alpha
Helix 18	AB9	A	435	446	Right-handed alpha
Helix 19	AC1	A	448	455	Right-handed alpha
Helix 20	AC2	A	457	461	Right-handed 310
Helix 21	AC3	A	471	487	Right-handed alpha
Helix 22	AC4	A	501	516	Right-handed alpha
Helix 23	AC5	A	527	532	Right-handed alpha
Helix 24	AC6	A	550	558	Right-handed alpha
Helix 25	AC7	A	559	569	Right-handed alpha
Helix 26	AC8	B	24	29	Right-handed alpha
Helix 27	AC9	B	30	34	Right-handed 310
Helix 28	AD1	B	35	54	Right-handed alpha
Helix 29	AD2	B	55	67	Right-handed alpha
Helix 30	AD3	B	75	123	Right-handed alpha
Helix 31	AD4	B	124	131	Right-handed alpha
Helix 32	AD5	B	132	141	Right-handed alpha
Helix 33	AD6	B	141	147	Right-handed alpha
Helix 34	AD7	B	152	176	Right-handed alpha
Helix 35	AD8	B	177	186	Right-handed alpha
Helix 36	AD9	B	186	224	Right-handed alpha
Helix 37	AE1	B	225	232	Right-handed alpha
Helix 38	AE2	B	234	261	Right-handed alpha
Helix 39	AE3	B	262	282	Right-handed alpha
Helix 40	AE4	B	282	288	Right-handed alpha
Helix 41	AE5	B	292	298	Right-handed alpha
Helix 42	AE6	B	298	331	Right-handed alpha
Helix 43	AE7	B	393	402	Right-handed alpha
Helix 44	AE8	B	423	429	Right-handed alpha
Helix 45	AE9	B	444	450	Right-handed alpha
Helix 46	AF1	B	457	468	Right-handed alpha
Helix 47	AF2	B	470	475	Right-handed alpha
Helix 48	AF3	B	486	490	Right-handed 310
Helix 49	AF4	B	493	508	Right-handed alpha
Helix 50	AF5	B	523	539	Right-handed alpha
Helix 51	AF6	B	549	553	Right-handed 310
Helix 52	AF7	B	572	580	Right-handed alpha
Helix 53	AF8	B	581	589	Right-handed alpha
Helix 54	AF9	C	3	8	Right-handed 310
Helix 55	AG1	C	11	31	Right-handed alpha
Helix 56	AG2	C	31	42	Right-handed alpha
Helix 57	AG3	C	51	57	Right-handed alpha
Helix 58	AG4	C	57	97	Right-handed alpha
Helix 59	AG5	C	102	107	Right-handed alpha
Helix 60	AG6	C	110	133	Right-handed alpha
Helix 61	AG7	C	135	152	Right-handed alpha
Helix 62	AG8	C	153	158	Right-handed 310
Helix 63	AG9	C	162	200	Right-handed alpha
Helix 64	AH1	C	201	208	Right-handed alpha
Helix 65	AH2	C	210	262	Right-handed alpha
Helix 66	AH3	C	269	311	Right-handed alpha
Helix 67	AH4	C	372	377	Right-handed alpha
Helix 68	AH5	C	401	406	Right-handed alpha
Helix 69	AH6	C	423	428	Right-handed alpha
Helix 70	AH7	C	435	446	Right-handed alpha
Helix 71	AH8	C	448	455	Right-handed alpha
Helix 72	AH9	C	457	460	Right-handed 310
Helix 73	AI1	C	471	487	Right-handed alpha
Helix 74	AI2	C	501	516	Right-handed alpha
Helix 75	AI3	C	527	532	Right-handed alpha
Helix 76	AI4	C	550	558	Right-handed alpha
Helix 77	AI5	C	559	569	Right-handed alpha
Helix 78	AI6	D	24	29	Right-handed alpha
Helix 79	AI7	D	30	34	Right-handed 310
Helix 80	AI8	D	35	54	Right-handed alpha
Helix 81	AI9	D	55	68	Right-handed alpha
Helix 82	AJ1	D	75	123	Right-handed alpha
Helix 83	AJ2	D	124	131	Right-handed alpha
Helix 84	AJ3	D	132	141	Right-handed alpha
Helix 85	AJ4	D	141	146	Right-handed alpha
Helix 86	AJ5	D	152	176	Right-handed alpha
Helix 87	AJ6	D	177	186	Right-handed alpha
Helix 88	AJ7	D	186	224	Right-handed alpha
Helix 89	AJ8	D	225	232	Right-handed alpha
Helix 90	AJ9	D	234	261	Right-handed alpha
Helix 91	AK1	D	262	288	Right-handed alpha
Helix 92	AK2	D	292	332	Right-handed alpha
Helix 93	AK3	D	393	403	Right-handed alpha
Helix 94	AK4	D	423	429	Right-handed alpha
Helix 95	AK5	D	444	450	Right-handed alpha
Helix 96	AK6	D	457	468	Right-handed alpha
Helix 97	AK7	D	470	475	Right-handed alpha
Helix 98	AK8	D	486	490	Right-handed 310
Helix 99	AK9	D	493	508	Right-handed alpha
Helix 100	AL1	D	523	539	Right-handed alpha
Helix 101	AL2	D	549	553	Right-handed 310
Helix 102	AL3	D	572	580	Right-handed alpha
Helix 103	AL4	D	581	589	Right-handed alpha

There are 14 sheets in PDB entry 6QV2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	356	first strand
Strand 2	A	332	339	anti-parallel
Strand 3	A	387	392	anti-parallel
Strand 4	A	395	396	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	490	493	parallel
Strand 3	A	520	524	parallel
Strand 4	A	361	365	parallel
Strand 5	A	536	541	parallel
Strand 6	A	544	549	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	374	first strand
Strand 2	B	355	362	anti-parallel
Strand 3	B	409	414	anti-parallel
Strand 4	B	417	418	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	434	first strand
Strand 2	B	512	516	parallel
Strand 3	B	542	546	parallel
Strand 4	B	383	387	parallel
Strand 5	B	558	562	parallel
Strand 6	B	567	571	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	356	first strand
Strand 2	C	332	339	anti-parallel
Strand 3	C	387	392	anti-parallel
Strand 4	C	395	396	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	490	493	parallel
Strand 3	C	520	524	parallel
Strand 4	C	361	365	parallel
Strand 5	C	536	541	parallel
Strand 6	C	544	549	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	422	first strand
Strand 2	C	462	463	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	374	first strand
Strand 2	D	355	362	anti-parallel
Strand 3	D	409	414	anti-parallel
Strand 4	D	417	418	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	434	first strand
Strand 2	D	512	516	parallel
Strand 3	D	542	546	parallel
Strand 4	D	383	387	parallel
Strand 5	D	558	562	parallel
Strand 6	D	567	571	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	79	83	anti-parallel
Strand 4	E	68	72	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	35	first strand
Strand 2	E	50	52	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	94	first strand
Strand 2	E	123	124	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	79	83	anti-parallel
Strand 4	F	68	72	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	35	first strand
Strand 2	F	50	51	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QV2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QV2