Analysis of interatomic Contacts of Structural Units in PDB entry:
6QVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QVD entry

There are 2 chains in PDB entry 6QVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 115GLY 872
A
 GLY 115GLY 872
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6QVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
115 154Right-handed alpha
Helix 2
AA2
B
158 181Right-handed alpha
Helix 3
AA3
B
190 199Right-handed alpha
Helix 4
AA4
B
203 207Right-handed 310
Helix 5
AA5
B
208 225Right-handed alpha
Helix 6
AA6
B
231 250Right-handed alpha
Helix 7
AA7
B
263 280Right-handed alpha
Helix 8
AA8
B
281 291Right-handed alpha
Helix 9
AA9
B
298 323Right-handed alpha
Helix 10
AB1
B
347 377Right-handed alpha
Helix 11
AB2
B
379 389Right-handed alpha
Helix 12
AB3
B
391 403Right-handed alpha
Helix 13
AB4
B
419 428Right-handed alpha
Helix 14
AB5
B
444 450Right-handed 310
Helix 15
AB6
B
455 477Right-handed alpha
Helix 16
AB7
B
484 506Right-handed alpha
Helix 17
AB8
B
521 538Right-handed alpha
Helix 18
AB9
B
540 551Right-handed alpha
Helix 19
AC1
B
555 574Right-handed alpha
Helix 20
AC2
B
576 585Right-handed alpha
Helix 21
AC3
B
621 632Right-handed alpha
Helix 22
AC4
B
654 666Right-handed alpha
Helix 23
AC5
B
833 845Right-handed alpha
Helix 24
AC6
B
862 871Right-handed alpha
Helix 25
AC7
A
116 154Right-handed alpha
Helix 26
AC8
A
158 181Right-handed alpha
Helix 27
AC9
A
190 199Right-handed alpha
Helix 28
AD1
A
203 207Right-handed 310
Helix 29
AD2
A
208 225Right-handed alpha
Helix 30
AD3
A
231 250Right-handed alpha
Helix 31
AD4
A
263 280Right-handed alpha
Helix 32
AD5
A
281 291Right-handed alpha
Helix 33
AD6
A
298 323Right-handed alpha
Helix 34
AD7
A
347 377Right-handed alpha
Helix 35
AD8
A
379 389Right-handed alpha
Helix 36
AD9
A
391 403Right-handed alpha
Helix 37
AE1
A
419 428Right-handed alpha
Helix 38
AE2
A
444 450Right-handed 310
Helix 39
AE3
A
455 477Right-handed alpha
Helix 40
AE4
A
484 506Right-handed alpha
Helix 41
AE5
A
521 538Right-handed alpha
Helix 42
AE6
A
540 551Right-handed alpha
Helix 43
AE7
A
555 574Right-handed alpha
Helix 44
AE8
A
576 585Right-handed alpha
Helix 45
AE9
A
621 632Right-handed alpha
Helix 46
AF1
A
654 666Right-handed alpha
Helix 47
AF2
A
833 845Right-handed alpha
Helix 48
AF3
A
862 871Right-handed alpha
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There are 6 sheets in PDB entry 6QVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
510 512first strand
Strand 2
B
515 517anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
636 640first strand
Strand 2
B
648 653anti-parallel
Strand 3
B
822 823anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
849 853first strand
Strand 2
B
856 861anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 512first strand
Strand 2
A
515 517anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
636 640first strand
Strand 2
A
648 653anti-parallel
Strand 3
A
822 823anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
849 853first strand
Strand 2
A
856 861anti-parallel
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