Analysis of interatomic Contacts of Structural Units in PDB entry:
6QVE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QVE entry

There are 5 chains in PDB entry 6QVE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	GLU 441
A	MET 1	GLU 441
W	THR 634	SER 780
H	MET 1	ALA 440
G	MET 1	ALA 440

There are 78 helices in PDB entry 6QVE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	11	27	Right-handed alpha
Helix 2	AA2	C	72	79	Right-handed alpha
Helix 3	AA3	C	102	106	Right-handed 310
Helix 4	AA4	C	114	124	Right-handed alpha
Helix 5	AA5	C	125	129	Right-handed 310
Helix 6	AA6	C	149	161	Right-handed alpha
Helix 7	AA7	C	182	195	Right-handed alpha
Helix 8	AA8	C	206	215	Right-handed alpha
Helix 9	AA9	C	228	239	Right-handed alpha
Helix 10	AB1	C	278	282	Right-handed 310
Helix 11	AB2	C	290	296	Right-handed alpha
Helix 12	AB3	C	306	310	Right-handed 310
Helix 13	AB4	C	324	336	Right-handed alpha
Helix 14	AB5	C	384	389	Right-handed alpha
Helix 15	AB6	C	389	400	Right-handed alpha
Helix 16	AB7	C	404	409	Right-handed alpha
Helix 17	AB8	C	410	412	Right-handed 310
Helix 18	AB9	C	419	437	Right-handed alpha
Helix 19	AC1	A	11	27	Right-handed alpha
Helix 20	AC2	A	48	52	Right-handed 310
Helix 21	AC3	A	74	81	Right-handed alpha
Helix 22	AC4	A	102	106	Right-handed 310
Helix 23	AC5	A	114	124	Right-handed alpha
Helix 24	AC6	A	149	161	Right-handed alpha
Helix 25	AC7	A	187	195	Right-handed alpha
Helix 26	AC8	A	206	215	Right-handed alpha
Helix 27	AC9	A	223	239	Right-handed alpha
Helix 28	AD1	A	239	244	Right-handed alpha
Helix 29	AD2	A	251	253	Right-handed 310
Helix 30	AD3	A	254	259	Right-handed alpha
Helix 31	AD4	A	287	292	Right-handed alpha
Helix 32	AD5	A	297	301	Right-handed 310
Helix 33	AD6	A	306	310	Right-handed 310
Helix 34	AD7	A	324	336	Right-handed alpha
Helix 35	AD8	A	384	397	Right-handed alpha
Helix 36	AD9	A	405	410	Right-handed alpha
Helix 37	AE1	A	414	417	Right-handed 310
Helix 38	AE2	A	418	437	Right-handed alpha
Helix 39	AE3	W	635	644	Right-handed alpha
Helix 40	AE4	W	653	658	Right-handed alpha
Helix 41	AE5	W	658	663	Right-handed alpha
Helix 42	AE6	H	10	28	Right-handed alpha
Helix 43	AE7	H	43	51	Right-handed 310
Helix 44	AE8	H	71	81	Right-handed alpha
Helix 45	AE9	H	115	127	Right-handed alpha
Helix 46	AF1	H	144	149	Right-handed alpha
Helix 47	AF2	H	153	161	Right-handed alpha
Helix 48	AF3	H	182	187	Right-handed alpha
Helix 49	AF4	H	187	198	Right-handed alpha
Helix 50	AF5	H	206	215	Right-handed alpha
Helix 51	AF6	H	223	239	Right-handed alpha
Helix 52	AF7	H	240	242	Right-handed 310
Helix 53	AF8	H	253	258	Right-handed alpha
Helix 54	AF9	H	287	294	Right-handed alpha
Helix 55	AG1	H	297	301	Right-handed 310
Helix 56	AG2	H	324	339	Right-handed alpha
Helix 57	AG3	H	340	343	Right-handed 310
Helix 58	AG4	H	384	401	Right-handed alpha
Helix 59	AG5	H	408	412	Right-handed 310
Helix 60	AG6	H	414	435	Right-handed alpha
Helix 61	AG7	G	10	28	Right-handed alpha
Helix 62	AG8	G	43	51	Right-handed 310
Helix 63	AG9	G	71	81	Right-handed alpha
Helix 64	AH1	G	114	127	Right-handed alpha
Helix 65	AH2	G	153	158	Right-handed alpha
Helix 66	AH3	G	182	195	Right-handed alpha
Helix 67	AH4	G	206	215	Right-handed alpha
Helix 68	AH5	G	223	236	Right-handed alpha
Helix 69	AH6	G	253	258	Right-handed alpha
Helix 70	AH7	G	279	283	Right-handed 310
Helix 71	AH8	G	289	294	Right-handed alpha
Helix 72	AH9	G	297	301	Right-handed 310
Helix 73	AI1	G	324	339	Right-handed alpha
Helix 74	AI2	G	340	343	Right-handed 310
Helix 75	AI3	G	384	401	Right-handed alpha
Helix 76	AI4	G	404	409	Right-handed alpha
Helix 77	AI5	G	410	412	Right-handed 310
Helix 78	AI6	G	416	435	Right-handed alpha

There are 13 sheets in PDB entry 6QVE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	3	9	parallel
Strand 3	C	132	140	parallel
Strand 4	C	165	172	parallel
Strand 5	C	200	205	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	61	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	273	first strand
Strand 2	C	373	381	anti-parallel
Strand 3	C	312	321	anti-parallel
Strand 4	C	353	354	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	3	8	parallel
Strand 3	A	132	140	parallel
Strand 4	A	165	172	parallel
Strand 5	A	200	205	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	314	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	317	321	anti-parallel
Strand 4	A	353	355	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	733	736	first strand
Strand 2	W	685	690	anti-parallel
Strand 3	W	675	677	anti-parallel
Strand 4	W	775	778	parallel
Strand 5	W	748	755	anti-parallel
Strand 6	W	760	763	anti-parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	93	94	first strand
Strand 2	H	65	69	parallel
Strand 3	H	3	9	parallel
Strand 4	H	132	138	parallel
Strand 5	H	165	168	parallel
Strand 6	H	200	202	parallel
Strand 7	H	267	273	parallel
Strand 8	H	375	379	anti-parallel
Strand 9	H	315	319	anti-parallel
Strand 10	H	351	356	parallel
Strand 11	H	246	248	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	56	first strand
Strand 2	H	60	63	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	93	first strand
Strand 2	G	65	68	parallel
Strand 3	G	3	9	parallel
Strand 4	G	132	138	parallel
Strand 5	G	165	168	parallel
Strand 6	G	200	202	parallel
Strand 7	G	267	268	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	56	first strand
Strand 2	G	60	63	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	172	first strand
Strand 2	G	204	205	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	246	248	first strand
Strand 2	G	351	356	anti-parallel
Strand 3	G	315	321	parallel
Strand 4	G	373	378	anti-parallel
Strand 5	G	272	273	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QVE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QVE