Analysis of interatomic Contacts of Structural Units in PDB entry:
6QVI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QVI entry

There are 3 chains in PDB entry 6QVI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1	HIS 528
B	ILE 1	GLU 526
C	ILE 1	SER 324

There are 24 helices in PDB entry 6QVI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	39	Right-handed alpha
Helix 2	AA2	A	52	56	Right-handed 310
Helix 3	AA3	A	187	189	Right-handed 310
Helix 4	AA4	A	192	196	Right-handed 310
Helix 5	AA5	A	197	200	Right-handed 310
Helix 6	AA6	A	240	242	Right-handed 310
Helix 7	AA7	A	291	300	Right-handed alpha
Helix 8	AA8	A	322	328	Right-handed alpha
Helix 9	AA9	B	9	38	Right-handed alpha
Helix 10	AB1	B	52	56	Right-handed 310
Helix 11	AB2	B	187	189	Right-handed 310
Helix 12	AB3	B	192	196	Right-handed 310
Helix 13	AB4	B	197	201	Right-handed alpha
Helix 14	AB5	B	291	300	Right-handed alpha
Helix 15	AB6	B	322	330	Right-handed alpha
Helix 16	AB7	B	498	502	Right-handed 310
Helix 17	AB8	C	9	37	Right-handed alpha
Helix 18	AB9	C	52	56	Right-handed 310
Helix 19	AC1	C	187	189	Right-handed 310
Helix 20	AC2	C	197	200	Right-handed 310
Helix 21	AC3	C	239	242	Right-handed 310
Helix 22	AC4	C	291	300	Right-handed alpha
Helix 23	AC5	C	322	330	Right-handed alpha
Helix 24	AC6	C	498	502	Right-handed 310

There are 21 sheets in PDB entry 6QVI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	518	first strand
Strand 2	A	118	128	anti-parallel
Strand 3	A	105	113	anti-parallel
Strand 4	A	91	98	anti-parallel
Strand 5	A	72	76	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	315	first strand
Strand 2	A	302	307	anti-parallel
Strand 3	A	372	375	parallel
Strand 4	A	396	402	parallel
Strand 5	A	430	435	parallel
Strand 6	A	445	452	parallel
Strand 7	A	463	470	parallel
Strand 8	A	137	139	parallel
Strand 9	A	158	160	parallel
Strand 10	A	210	212	parallel
Strand 11	A	235	237	parallel

Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	151	155	parallel
Strand 3	A	489	494	parallel
Strand 4	A	463	466	parallel

Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	378	381	parallel
Strand 3	A	411	413	parallel
Strand 4	A	439	441	parallel
Strand 5	A	455	459	parallel
Strand 6	A	472	476	parallel

Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	346	first strand
Strand 2	A	352	358	anti-parallel
Strand 3	A	364	369	anti-parallel
Strand 4	A	385	390	parallel
Strand 5	A	417	419	parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	82	first strand
Strand 2	A	88	92	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	124	first strand
Strand 2	A	520	527	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	174	first strand
Strand 2	A	216	219	parallel

Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	525	first strand
Strand 2	B	118	128	anti-parallel
Strand 3	B	105	113	anti-parallel
Strand 4	B	91	98	anti-parallel
Strand 5	B	72	76	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	315	first strand
Strand 2	B	302	307	anti-parallel
Strand 3	B	372	375	parallel
Strand 4	B	396	402	parallel
Strand 5	B	430	435	parallel
Strand 6	B	445	452	parallel
Strand 7	B	463	470	parallel
Strand 8	B	137	139	parallel
Strand 9	B	158	160	parallel
Strand 10	B	210	212	parallel

Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	155	first strand
Strand 2	B	489	494	parallel
Strand 3	B	463	466	parallel

Back to list of sheets
Back to top of page

There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	378	381	parallel
Strand 3	B	411	413	parallel
Strand 4	B	439	441	parallel
Strand 5	B	456	459	parallel
Strand 6	B	473	476	parallel

Back to list of sheets
Back to top of page

There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	346	first strand
Strand 2	B	352	358	anti-parallel
Strand 3	B	364	369	anti-parallel
Strand 4	B	385	390	parallel
Strand 5	B	417	419	parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	82	first strand
Strand 2	B	88	92	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	515	525	first strand
Strand 2	C	118	128	anti-parallel
Strand 3	C	105	113	anti-parallel
Strand 4	C	91	98	anti-parallel
Strand 5	C	72	76	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	315	first strand
Strand 2	C	302	307	anti-parallel
Strand 3	C	372	375	parallel
Strand 4	C	396	402	parallel
Strand 5	C	430	435	parallel
Strand 6	C	445	452	parallel
Strand 7	C	463	470	parallel
Strand 8	C	137	139	parallel
Strand 9	C	158	160	parallel
Strand 10	C	210	212	parallel
Strand 11	C	235	237	parallel

Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	151	155	parallel
Strand 3	C	489	494	parallel
Strand 4	C	463	466	parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	219	first strand
Strand 2	C	244	246	parallel

Back to list of sheets
Back to top of page

There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	335	first strand
Strand 2	C	378	381	parallel
Strand 3	C	411	413	parallel
Strand 4	C	439	441	parallel
Strand 5	C	455	459	parallel
Strand 6	C	472	476	parallel

Back to list of sheets
Back to top of page

There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	346	first strand
Strand 2	C	352	358	anti-parallel
Strand 3	C	365	369	anti-parallel
Strand 4	C	385	390	parallel
Strand 5	C	417	419	parallel

Back to list of sheets
Back to top of page

There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	88	92	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QVI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QVI