Analysis of interatomic Contacts of Structural Units in PDB entry:
6QVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QVJ entry

There are 5 chains in PDB entry 6QVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
 SER 0GLN 116
O
 MET 1GLU 441
X
 MET 1GLU 441
S
 MET 1ALA 440
U
 MET 1ALA 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 6QVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
I
3 12Right-handed alpha
Helix 2
AA2
I
21 30Right-handed alpha
Helix 3
AA3
I
112 115Right-handed 310
Helix 4
AA4
O
10 28Right-handed alpha
Helix 5
AA5
O
74 78Right-handed 310
Helix 6
AA6
O
81 86Right-handed 310
Helix 7
AA7
O
102 107Right-handed alpha
Helix 8
AA8
O
114 127Right-handed alpha
Helix 9
AA9
O
143 161Right-handed alpha
Helix 10
AB1
O
182 188Right-handed alpha
Helix 11
AB2
O
188 193Right-handed alpha
Helix 12
AB3
O
206 215Right-handed alpha
Helix 13
AB4
O
223 239Right-handed alpha
Helix 14
AB5
O
239 244Right-handed alpha
Helix 15
AB6
O
251 260Right-handed alpha
Helix 16
AB7
O
278 282Right-handed 310
Helix 17
AB8
O
306 310Right-handed 310
Helix 18
AB9
O
324 336Right-handed alpha
Helix 19
AC1
O
384 389Right-handed alpha
Helix 20
AC2
O
392 397Right-handed alpha
Helix 21
AC3
O
404 409Right-handed alpha
Helix 22
AC4
O
410 412Right-handed 310
Helix 23
AC5
O
418 437Right-handed alpha
Helix 24
AC6
X
10 25Right-handed alpha
Helix 25
AC7
X
47 51Right-handed 310
Helix 26
AC8
X
72 81Right-handed alpha
Helix 27
AC9
X
82 86Right-handed 310
Helix 28
AD1
X
114 124Right-handed alpha
Helix 29
AD2
X
144 161Right-handed alpha
Helix 30
AD3
X
182 195Right-handed alpha
Helix 31
AD4
X
206 215Right-handed alpha
Helix 32
AD5
X
223 239Right-handed alpha
Helix 33
AD6
X
239 244Right-handed alpha
Helix 34
AD7
X
251 259Right-handed alpha
Helix 35
AD8
X
306 310Right-handed 310
Helix 36
AD9
X
324 336Right-handed alpha
Helix 37
AE1
X
384 392Right-handed alpha
Helix 38
AE2
X
392 401Right-handed alpha
Helix 39
AE3
X
405 410Right-handed alpha
Helix 40
AE4
X
415 437Right-handed alpha
Helix 41
AE5
S
9 29Right-handed alpha
Helix 42
AE6
S
41 48Right-handed alpha
Helix 43
AE7
S
49 51Right-handed 310
Helix 44
AE8
S
72 81Right-handed alpha
Helix 45
AE9
S
110 114Right-handed 310
Helix 46
AF1
S
115 128Right-handed alpha
Helix 47
AF2
S
144 149Right-handed alpha
Helix 48
AF3
S
149 161Right-handed alpha
Helix 49
AF4
S
182 192Right-handed alpha
Helix 50
AF5
S
206 215Right-handed alpha
Helix 51
AF6
S
223 238Right-handed alpha
Helix 52
AF7
S
239 241Right-handed 310
Helix 53
AF8
S
253 258Right-handed alpha
Helix 54
AF9
S
279 284Right-handed 310
Helix 55
AG1
S
287 296Right-handed alpha
Helix 56
AG2
S
325 338Right-handed alpha
Helix 57
AG3
S
386 401Right-handed alpha
Helix 58
AG4
S
408 412Right-handed 310
Helix 59
AG5
S
414 438Right-handed alpha
Helix 60
AG6
U
9 28Right-handed alpha
Helix 61
AG7
U
41 48Right-handed alpha
Helix 62
AG8
U
49 51Right-handed 310
Helix 63
AG9
U
57 59Right-handed 310
Helix 64
AH1
U
72 81Right-handed alpha
Helix 65
AH2
U
115 127Right-handed alpha
Helix 66
AH3
U
144 149Right-handed alpha
Helix 67
AH4
U
149 161Right-handed alpha
Helix 68
AH5
U
182 192Right-handed alpha
Helix 69
AH6
U
206 215Right-handed alpha
Helix 70
AH7
U
223 226Right-handed 310
Helix 71
AH8
U
227 239Right-handed alpha
Helix 72
AH9
U
253 258Right-handed alpha
Helix 73
AI1
U
279 284Right-handed 310
Helix 74
AI2
U
287 296Right-handed alpha
Helix 75
AI3
U
297 301Right-handed 310
Helix 76
AI4
U
324 338Right-handed alpha
Helix 77
AI5
U
386 401Right-handed alpha
Helix 78
AI6
U
408 412Right-handed 310
Helix 79
AI7
U
416 438Right-handed alpha
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There are 14 sheets in PDB entry 6QVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
65 66first strand
Strand 2
I
51 57anti-parallel
Strand 3
I
39 44anti-parallel
Strand 4
I
107 110parallel
Strand 5
I
80 87anti-parallel
Strand 6
I
92 95anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
65 66first strand
Strand 2
O
4 8parallel
Strand 3
O
134 140parallel
Strand 4
O
165 172parallel
Strand 5
O
202 205parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
54 55first strand
Strand 2
O
61 62anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
269 273first strand
Strand 2
O
373 381anti-parallel
Strand 3
O
312 314anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
269 273first strand
Strand 2
O
373 381anti-parallel
Strand 3
O
319 321anti-parallel
Strand 4
O
355 356parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
65 68first strand
Strand 2
X
6 9parallel
Strand 3
X
134 140parallel
Strand 4
X
165 172parallel
Strand 5
X
200 205parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
53 55first strand
Strand 2
X
61 63anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
269 273first strand
Strand 2
X
373 379anti-parallel
Strand 3
X
317 321anti-parallel
Strand 4
X
353 354parallel
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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
92 94first strand
Strand 2
S
65 69parallel
Strand 3
S
3 8parallel
Strand 4
S
132 138parallel
Strand 5
S
165 168parallel
Strand 6
S
200 202parallel
Strand 7
S
267 273parallel
Strand 8
S
373 381anti-parallel
Strand 9
S
312 321anti-parallel
Strand 10
S
351 355parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
53 56first strand
Strand 2
S
60 63anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
171 172first strand
Strand 2
S
204 205parallel
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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
93 94first strand
Strand 2
U
65 69parallel
Strand 3
U
3 8parallel
Strand 4
U
132 138parallel
Strand 5
U
165 168parallel
Strand 6
U
200 202parallel
Strand 7
U
267 273parallel
Strand 8
U
374 381anti-parallel
Strand 9
U
312 320anti-parallel
Strand 10
U
351 355parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
53 55first strand
Strand 2
U
61 63anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
171 172first strand
Strand 2
U
204 205parallel
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