Analysis of interatomic Contacts of Structural Units in PDB entry:
6QVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QVM entry

There is 1 chain in PDB entry 6QVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1GLN 658
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6QVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 9Right-handed alpha
Helix 2
AA2
A
11 16Right-handed alpha
Helix 3
AA3
A
19 23Right-handed 310
Helix 4
AA4
A
30 34Right-handed 310
Helix 5
AA5
A
35 41Right-handed alpha
Helix 6
AA6
A
55 64Right-handed alpha
Helix 7
AA7
A
78 91Right-handed alpha
Helix 8
AA8
A
93 98Right-handed 310
Helix 9
AA9
A
105 117Right-handed alpha
Helix 10
AB1
A
119 124Right-handed alpha
Helix 11
AB2
A
127 132Right-handed alpha
Helix 12
AB3
A
136 140Right-handed 310
Helix 13
AB4
A
141 143Right-handed 310
Helix 14
AB5
A
144 154Right-handed alpha
Helix 15
AB6
A
175 190Right-handed alpha
Helix 16
AB7
A
202 211Right-handed alpha
Helix 17
AB8
A
212 218Right-handed 310
Helix 18
AB9
A
219 222Right-handed 310
Helix 19
AC1
A
226 231Right-handed 310
Helix 20
AC2
A
235 239Right-handed 310
Helix 21
AC3
A
243 245Right-handed 310
Helix 22
AC4
A
286 291Right-handed alpha
Helix 23
AC5
A
292 294Right-handed 310
Helix 24
AC6
A
328 333Right-handed alpha
Helix 25
AC7
A
335 340Right-handed alpha
Helix 26
AC8
A
343 347Right-handed 310
Helix 27
AC9
A
349 353Right-handed 310
Helix 28
AD1
A
357 362Right-handed alpha
Helix 29
AD2
A
371 375Right-handed 310
Helix 30
AD3
A
393 400Right-handed alpha
Helix 31
AD4
A
406 411Right-handed 310
Helix 32
AD5
A
413 427Right-handed alpha
Helix 33
AD6
A
435 439Right-handed 310
Helix 34
AD7
A
440 444Right-handed 310
Helix 35
AD8
A
449 454Right-handed alpha
Helix 36
AD9
A
469 478Right-handed alpha
Helix 37
AE1
A
488 492Right-handed 310
Helix 38
AE2
A
495 502Right-handed alpha
Helix 39
AE3
A
505 512Right-handed 310
Helix 40
AE4
A
525 531Right-handed alpha
Helix 41
AE5
A
532 535Right-handed 310
Helix 42
AE6
A
550 554Right-handed alpha
Helix 43
AE7
A
555 562Right-handed 310
Helix 44
AE8
A
582 606Right-handed alpha
Helix 45
AE9
A
617 630Right-handed alpha
Helix 46
AF1
A
634 636Right-handed 310
Helix 47
AF2
A
637 650Right-handed alpha
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There are 5 sheets in PDB entry 6QVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
165 167anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
247 252anti-parallel
Strand 3
A
256 261anti-parallel
Strand 4
A
269 272anti-parallel
Strand 5
A
277 280anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
323 324anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 313first strand
Strand 2
A
316 319anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
377 380anti-parallel
Strand 3
A
544 549anti-parallel
Strand 4
A
566 570anti-parallel
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