Analysis of interatomic Contacts of Structural Units in PDB entry:
6QVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QVP entry

There are 6 chains in PDB entry 6QVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 103ILE 204
E
 LYS 103LYS 206
C
 LYS 103THR 203
D
 LYS 103LYS 206
B
 LYS 103LYS 206
F
 LYS 103LYS 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6QVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
125 137Right-handed alpha
Helix 2
AA2
A
156 179Right-handed alpha
Helix 3
AA3
E
125 136Right-handed alpha
Helix 4
AA4
E
137 140Right-handed 310
Helix 5
AA5
E
156 179Right-handed alpha
Helix 6
AA6
C
125 137Right-handed alpha
Helix 7
AA7
C
138 140Right-handed 310
Helix 8
AA8
C
156 179Right-handed alpha
Helix 9
AA9
D
125 137Right-handed alpha
Helix 10
AB1
D
157 179Right-handed alpha
Helix 11
AB2
B
125 137Right-handed alpha
Helix 12
AB3
B
159 179Right-handed alpha
Helix 13
AB4
F
125 137Right-handed alpha
Helix 14
AB5
F
159 179Right-handed alpha
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There are 3 sheets in PDB entry 6QVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
112 116anti-parallel
Strand 3
A
198 203anti-parallel
Strand 4
A
144 149anti-parallel
Strand 5
A
184 190parallel
Strand 6
B
184 190anti-parallel
Strand 7
B
142 150parallel
Strand 8
B
197 205anti-parallel
Strand 9
B
112 117anti-parallel
Strand 10
B
105 109anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
105 108first strand
Strand 2
E
112 116anti-parallel
Strand 3
E
198 203anti-parallel
Strand 4
E
144 149anti-parallel
Strand 5
E
184 190parallel
Strand 6
F
184 190anti-parallel
Strand 7
F
142 150parallel
Strand 8
F
197 205anti-parallel
Strand 9
F
112 117anti-parallel
Strand 10
F
105 108anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 108first strand
Strand 2
C
112 116anti-parallel
Strand 3
C
198 202anti-parallel
Strand 4
C
144 149anti-parallel
Strand 5
C
184 190parallel
Strand 6
D
184 190anti-parallel
Strand 7
D
142 150parallel
Strand 8
D
197 205anti-parallel
Strand 9
D
112 117anti-parallel
Strand 10
D
105 109anti-parallel
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