Analysis of interatomic Contacts of Structural Units in PDB entry:
6QVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QVT entry

There are 2 chains in PDB entry 6QVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 132CYS 406
B
 SER 136CYS 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6QVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
136 148Right-handed alpha
Helix 2
AA2
A
162 166Right-handed 310
Helix 3
AA3
A
173 178Right-handed alpha
Helix 4
AA4
A
190 194Right-handed 310
Helix 5
AA5
A
198 204Right-handed alpha
Helix 6
AA6
A
219 224Right-handed alpha
Helix 7
AA7
A
234 240Right-handed alpha
Helix 8
AA8
A
241 245Right-handed 310
Helix 9
AA9
A
246 251Right-handed 310
Helix 10
AB1
A
265 272Right-handed alpha
Helix 11
AB2
A
277 288Right-handed alpha
Helix 12
AB3
A
298 312Right-handed alpha
Helix 13
AB4
A
322 334Right-handed alpha
Helix 14
AB5
A
373 383Right-handed alpha
Helix 15
AB6
A
386 394Right-handed alpha
Helix 16
AB7
A
401 404Right-handed 310
Helix 17
AB8
B
137 148Right-handed alpha
Helix 18
AB9
B
162 166Right-handed 310
Helix 19
AC1
B
173 178Right-handed alpha
Helix 20
AC2
B
190 194Right-handed 310
Helix 21
AC3
B
198 204Right-handed alpha
Helix 22
AC4
B
219 224Right-handed alpha
Helix 23
AC5
B
234 240Right-handed alpha
Helix 24
AC6
B
241 245Right-handed 310
Helix 25
AC7
B
246 251Right-handed 310
Helix 26
AC8
B
265 272Right-handed alpha
Helix 27
AC9
B
277 288Right-handed alpha
Helix 28
AD1
B
298 312Right-handed alpha
Helix 29
AD2
B
322 334Right-handed alpha
Helix 30
AD3
B
373 383Right-handed alpha
Helix 31
AD4
B
386 394Right-handed alpha
Helix 32
AD5
B
401 404Right-handed 310
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There are 2 sheets in PDB entry 6QVT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
253 257parallel
Strand 3
A
229 233parallel
Strand 4
A
207 211parallel
Strand 5
A
181 187parallel
Strand 6
A
335 341parallel
Strand 7
A
395 399anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 295first strand
Strand 2
B
253 257parallel
Strand 3
B
229 233parallel
Strand 4
B
207 211parallel
Strand 5
B
181 187parallel
Strand 6
B
335 341parallel
Strand 7
B
395 399anti-parallel
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