Analysis of interatomic Contacts of Structural Units in PDB entry:
6QWL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QWL entry

There are 5 chains in PDB entry 6QWL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLN 206	VAL 716
K	MET 1	THR 667
Q	LEU 59	LYS 252
T	G 1	U 12
W	A 1	C 14

There are 59 helices in PDB entry 6QWL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	206	215	Right-handed alpha
Helix 2	AA2	E	222	232	Right-handed alpha
Helix 3	AA3	E	239	246	Right-handed alpha
Helix 4	AA4	E	258	262	Right-handed 310
Helix 5	AA5	E	266	270	Right-handed 310
Helix 6	AA6	E	301	313	Right-handed alpha
Helix 7	AA7	E	314	317	Right-handed 310
Helix 8	AA8	E	332	345	Right-handed alpha
Helix 9	AA9	E	359	366	Right-handed alpha
Helix 10	AB1	E	376	380	Right-handed 310
Helix 11	AB2	E	402	410	Right-handed alpha
Helix 12	AB3	E	429	447	Right-handed alpha
Helix 13	AB4	E	450	472	Right-handed alpha
Helix 14	AB5	E	529	533	Right-handed 310
Helix 15	AB6	E	564	572	Right-handed alpha
Helix 16	AB7	E	575	596	Right-handed alpha
Helix 17	AB8	E	600	605	Right-handed alpha
Helix 18	AB9	E	628	646	Right-handed alpha
Helix 19	AC1	E	648	670	Right-handed alpha
Helix 20	AC2	E	678	688	Right-handed alpha
Helix 21	AC3	E	693	714	Right-handed alpha
Helix 22	AC4	K	5	11	Right-handed 310
Helix 23	AC5	K	13	17	Right-handed 310
Helix 24	AC6	K	37	48	Right-handed alpha
Helix 25	AC7	K	49	51	Right-handed 310
Helix 26	AC8	K	85	98	Right-handed alpha
Helix 27	AC9	K	101	116	Right-handed alpha
Helix 28	AD1	K	119	123	Right-handed 310
Helix 29	AD2	K	141	151	Right-handed alpha
Helix 30	AD3	K	152	154	Right-handed 310
Helix 31	AD4	K	162	172	Right-handed alpha
Helix 32	AD5	K	173	176	Right-handed 310
Helix 33	AD6	K	214	223	Right-handed alpha
Helix 34	AD7	K	245	264	Right-handed alpha
Helix 35	AD8	K	314	326	Right-handed alpha
Helix 36	AD9	K	327	329	Right-handed 310
Helix 37	AE1	K	330	338	Right-handed alpha
Helix 38	AE2	K	339	344	Right-handed alpha
Helix 39	AE3	K	377	381	Right-handed 310
Helix 40	AE4	K	382	393	Right-handed alpha
Helix 41	AE5	K	394	396	Right-handed 310
Helix 42	AE6	K	413	426	Right-handed alpha
Helix 43	AE7	K	454	471	Right-handed alpha
Helix 44	AE8	K	518	537	Right-handed alpha
Helix 45	AE9	K	539	558	Right-handed alpha
Helix 46	AF1	K	571	582	Right-handed alpha
Helix 47	AF2	K	589	593	Right-handed 310
Helix 48	AF3	K	607	612	Right-handed alpha
Helix 49	AF4	K	616	624	Right-handed alpha
Helix 50	AF5	Q	64	69	Right-handed 310
Helix 51	AF6	Q	95	105	Right-handed alpha
Helix 52	AF7	Q	112	117	Right-handed alpha
Helix 53	AF8	Q	118	129	Right-handed alpha
Helix 54	AF9	Q	157	170	Right-handed alpha
Helix 55	AG1	Q	178	193	Right-handed alpha
Helix 56	AG2	Q	194	198	Right-handed 310
Helix 57	AG3	Q	201	214	Right-handed alpha
Helix 58	AG4	Q	227	233	Right-handed alpha
Helix 59	AG5	Q	233	238	Right-handed alpha

There are 13 sheets in PDB entry 6QWL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	373	374	first strand
Strand 2	K	364	365	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	480	486	first strand
Strand 2	E	492	502	anti-parallel
Strand 3	E	513	519	anti-parallel
Strand 4	E	561	563	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	521	522	first strand
Strand 2	E	550	557	anti-parallel
Strand 3	E	537	538	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	521	522	first strand
Strand 2	E	550	557	anti-parallel
Strand 3	E	542	545	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	623	627	first strand
Strand 2	E	615	620	anti-parallel
Strand 3	K	2	3	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	55	first strand
Strand 2	K	66	67	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	128	129	first strand
Strand 2	K	136	137	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	178	181	first strand
Strand 2	K	210	213	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	435	437	first strand
Strand 2	K	450	452	anti-parallel
Strand 3	K	298	301	anti-parallel
Strand 4	K	484	485	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	348	350	first strand
Strand 2	K	401	403	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	73	74	first strand
Strand 2	Q	77	78	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	131	135	first strand
Strand 2	Q	244	247	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	143	148	first strand
Strand 2	Q	217	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QWL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QWL