Analysis of interatomic Contacts of Structural Units in PDB entry:
6QWN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QWN entry

There are 10 chains in PDB entry 6QWN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 63	GLY 400
F	ARG 1061	ARG 1107
B	LEU 63	GLY 400
G	ARG 1061	ARG 1107
C	TYR 59	GLY 400
H	ARG 1061	ARG 1107
D	LEU 63	GLY 400
I	ARG 1061	ARG 1107
E	LEU 63	GLY 400
J	ARG 1061	ARG 1107

There are 52 helices in PDB entry 6QWN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	84	Right-handed alpha
Helix 2	AA2	A	101	105	Right-handed 310
Helix 3	AA3	A	137	143	Right-handed 310
Helix 4	AA4	A	161	167	Right-handed 310
Helix 5	AA5	A	209	213	Right-handed 310
Helix 6	AA6	A	232	238	Right-handed 310
Helix 7	AA7	A	257	261	Right-handed 310
Helix 8	AA8	A	279	285	Right-handed 310
Helix 9	AA9	A	303	309	Right-handed 310
Helix 10	AB1	F	1063	1068	Right-handed alpha
Helix 11	AB2	B	69	84	Right-handed alpha
Helix 12	AB3	B	101	105	Right-handed 310
Helix 13	AB4	B	137	143	Right-handed 310
Helix 14	AB5	B	161	167	Right-handed 310
Helix 15	AB6	B	209	213	Right-handed 310
Helix 16	AB7	B	232	238	Right-handed 310
Helix 17	AB8	B	257	261	Right-handed 310
Helix 18	AB9	B	279	285	Right-handed 310
Helix 19	AC1	B	303	309	Right-handed 310
Helix 20	AC2	B	327	332	Right-handed alpha
Helix 21	AC3	B	384	388	Right-handed 310
Helix 22	AC4	G	1063	1068	Right-handed alpha
Helix 23	AC5	C	69	85	Right-handed alpha
Helix 24	AC6	C	101	105	Right-handed 310
Helix 25	AC7	C	137	143	Right-handed 310
Helix 26	AC8	C	161	167	Right-handed 310
Helix 27	AC9	C	209	213	Right-handed 310
Helix 28	AD1	C	232	238	Right-handed 310
Helix 29	AD2	C	279	285	Right-handed 310
Helix 30	AD3	C	303	309	Right-handed 310
Helix 31	AD4	C	329	333	Right-handed 310
Helix 32	AD5	D	69	84	Right-handed alpha
Helix 33	AD6	D	101	105	Right-handed 310
Helix 34	AD7	D	137	143	Right-handed 310
Helix 35	AD8	D	161	167	Right-handed 310
Helix 36	AD9	D	210	215	Right-handed alpha
Helix 37	AE1	D	232	238	Right-handed 310
Helix 38	AE2	D	279	285	Right-handed 310
Helix 39	AE3	D	303	309	Right-handed 310
Helix 40	AE4	D	327	333	Right-handed 310
Helix 41	AE5	D	384	388	Right-handed 310
Helix 42	AE6	I	1063	1068	Right-handed alpha
Helix 43	AE7	E	69	84	Right-handed alpha
Helix 44	AE8	E	101	105	Right-handed 310
Helix 45	AE9	E	137	143	Right-handed 310
Helix 46	AF1	E	161	167	Right-handed 310
Helix 47	AF2	E	209	213	Right-handed 310
Helix 48	AF3	E	232	238	Right-handed 310
Helix 49	AF4	E	279	285	Right-handed 310
Helix 50	AF5	E	303	309	Right-handed 310
Helix 51	AF6	E	327	333	Right-handed 310
Helix 52	AF7	J	1063	1070	Right-handed alpha

There are 16 sheets in PDB entry 6QWN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	133	135	anti-parallel
Strand 3	A	156	157	parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	112	first strand
Strand 2	A	120	126	anti-parallel
Strand 3	A	148	150	parallel
Strand 4	A	172	174	parallel
Strand 5	A	196	198	parallel
Strand 6	A	219	221	parallel
Strand 7	A	242	244	parallel
Strand 8	A	266	268	parallel
Strand 9	A	290	292	parallel
Strand 10	A	314	316	parallel
Strand 11	A	339	340	parallel
Strand 12	A	363	364	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	203	206	parallel
Strand 3	A	226	227	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	300	first strand
Strand 2	A	321	322	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	133	135	anti-parallel
Strand 3	B	156	157	parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	112	first strand
Strand 2	B	120	126	anti-parallel
Strand 3	B	148	150	parallel
Strand 4	B	172	174	parallel
Strand 5	B	196	198	parallel
Strand 6	B	219	221	parallel
Strand 7	B	242	244	parallel
Strand 8	B	266	268	parallel
Strand 9	B	290	292	parallel
Strand 10	B	314	316	parallel
Strand 11	B	338	340	parallel
Strand 12	B	362	364	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	203	204	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	300	first strand
Strand 2	B	321	322	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	326	first strand
Strand 2	B	348	349	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	88	first strand
Strand 2	C	133	135	anti-parallel
Strand 3	C	155	157	parallel

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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	112	first strand
Strand 2	C	120	126	anti-parallel
Strand 3	C	148	150	parallel
Strand 4	C	172	174	parallel
Strand 5	C	196	198	parallel
Strand 6	C	219	221	parallel
Strand 7	C	242	244	parallel
Strand 8	C	267	268	parallel
Strand 9	C	290	292	parallel
Strand 10	C	314	316	parallel
Strand 11	C	338	340	parallel
Strand 12	C	362	364	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	88	first strand
Strand 2	D	133	135	anti-parallel
Strand 3	D	156	157	parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	112	first strand
Strand 2	D	120	126	anti-parallel
Strand 3	D	148	150	parallel
Strand 4	D	172	174	parallel
Strand 5	D	196	198	parallel
Strand 6	D	219	221	parallel
Strand 7	D	242	244	parallel
Strand 8	D	266	268	parallel
Strand 9	D	290	292	parallel
Strand 10	D	314	316	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	276	first strand
Strand 2	D	297	300	parallel
Strand 3	D	321	322	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	88	first strand
Strand 2	E	133	135	anti-parallel
Strand 3	E	155	157	parallel

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There are 12 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	112	first strand
Strand 2	E	120	126	anti-parallel
Strand 3	E	148	152	parallel
Strand 4	E	172	176	parallel
Strand 5	E	196	200	parallel
Strand 6	E	219	221	parallel
Strand 7	E	242	244	parallel
Strand 8	E	266	268	parallel
Strand 9	E	290	292	parallel
Strand 10	E	314	316	parallel
Strand 11	E	338	340	parallel
Strand 12	E	362	364	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QWN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QWN