Analysis of interatomic Contacts of Structural Units in PDB entry:
6QWO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QWO entry

There are 2 chains in PDB entry 6QWO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 252
B
 MET 1LEU 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6QWO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 61Right-handed alpha
Helix 2
AA2
A
64 66Right-handed 310
Helix 3
AA3
A
77 82Right-handed alpha
Helix 4
AA4
A
83 91Right-handed alpha
Helix 5
AA5
A
101 103Right-handed 310
Helix 6
AA6
A
105 110Right-handed 310
Helix 7
AA7
A
113 115Right-handed 310
Helix 8
AA8
A
180 185Right-handed alpha
Helix 9
AA9
A
188 196Right-handed alpha
Helix 10
AB1
A
198 210Right-handed alpha
Helix 11
AB2
A
228 239Right-handed alpha
Helix 12
AB3
A
242 250Right-handed 310
Helix 13
AB4
B
51 61Right-handed alpha
Helix 14
AB5
B
64 66Right-handed 310
Helix 15
AB6
B
77 82Right-handed alpha
Helix 16
AB7
B
83 91Right-handed alpha
Helix 17
AB8
B
101 103Right-handed 310
Helix 18
AB9
B
105 109Right-handed 310
Helix 19
AC1
B
113 115Right-handed 310
Helix 20
AC2
B
180 185Right-handed alpha
Helix 21
AC3
B
188 196Right-handed alpha
Helix 22
AC4
B
198 210Right-handed alpha
Helix 23
AC5
B
227 239Right-handed alpha
Helix 24
AC6
B
242 250Right-handed 310
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There are 5 sheets in PDB entry 6QWO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
13 17anti-parallel
Strand 3
A
33 37anti-parallel
Strand 4
A
40 44anti-parallel
Strand 5
A
68 72parallel
Strand 6
A
95 99parallel
Strand 7
A
117 120parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
134 139anti-parallel
Strand 3
A
149 153anti-parallel
Strand 4
A
158 162anti-parallel
Strand 5
A
216 219parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
224 225parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
13 17anti-parallel
Strand 3
B
33 37anti-parallel
Strand 4
B
40 44anti-parallel
Strand 5
B
68 72parallel
Strand 6
B
95 99parallel
Strand 7
B
117 120parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 128first strand
Strand 2
B
134 139anti-parallel
Strand 3
B
149 153anti-parallel
Strand 4
B
158 162anti-parallel
Strand 5
B
216 219parallel
Strand 6
B
224 226anti-parallel
Strand 7
B
177 178parallel
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