Analysis of interatomic Contacts of Structural Units in PDB entry:
6QX3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QX3 entry

There are 6 chains in PDB entry 6QX3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 A 1 A 10
G
 U 9 U 12
O
 GLN 1THR 121
B
 MET 1SER 673
A
 GLU 202ARG 716
C
 LYS 41LYS 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6QX3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
O
28 32Right-handed 310
Helix 2
AA2
O
62 65Right-handed 310
Helix 3
AA3
O
87 91Right-handed 310
Helix 4
AA4
B
4 11Right-handed 310
Helix 5
AA5
B
17 21Right-handed 310
Helix 6
AA6
B
38 49Right-handed alpha
Helix 7
AA7
B
84 99Right-handed alpha
Helix 8
AA8
B
101 114Right-handed alpha
Helix 9
AA9
B
119 124Right-handed alpha
Helix 10
AB1
B
140 153Right-handed alpha
Helix 11
AB2
B
156 161Right-handed 310
Helix 12
AB3
B
162 174Right-handed alpha
Helix 13
AB4
B
213 222Right-handed alpha
Helix 14
AB5
B
247 263Right-handed alpha
Helix 15
AB6
B
275 289Right-handed alpha
Helix 16
AB7
B
308 313Right-handed alpha
Helix 17
AB8
B
314 326Right-handed alpha
Helix 18
AB9
B
330 345Right-handed alpha
Helix 19
AC1
B
370 375Right-handed 310
Helix 20
AC2
B
382 393Right-handed alpha
Helix 21
AC3
B
414 426Right-handed alpha
Helix 22
AC4
B
455 470Right-handed alpha
Helix 23
AC5
B
518 536Right-handed alpha
Helix 24
AC6
B
544 560Right-handed alpha
Helix 25
AC7
B
572 583Right-handed alpha
Helix 26
AC8
B
590 594Right-handed 310
Helix 27
AC9
B
607 612Right-handed alpha
Helix 28
AD1
B
617 625Right-handed alpha
Helix 29
AD2
A
211 216Right-handed alpha
Helix 30
AD3
A
226 235Right-handed alpha
Helix 31
AD4
A
241 247Right-handed alpha
Helix 32
AD5
A
302 312Right-handed alpha
Helix 33
AD6
A
331 352Right-handed alpha
Helix 34
AD7
A
364 369Right-handed alpha
Helix 35
AD8
A
380 385Right-handed alpha
Helix 36
AD9
A
407 412Right-handed alpha
Helix 37
AE1
A
433 451Right-handed alpha
Helix 38
AE2
A
454 460Right-handed alpha
Helix 39
AE3
A
460 476Right-handed alpha
Helix 40
AE4
A
582 600Right-handed alpha
Helix 41
AE5
A
607 612Right-handed alpha
Helix 42
AE6
A
632 650Right-handed alpha
Helix 43
AE7
A
652 662Right-handed alpha
Helix 44
AE8
A
663 674Right-handed alpha
Helix 45
AE9
A
683 692Right-handed alpha
Helix 46
AF1
A
699 711Right-handed alpha
Helix 47
AF2
C
42 53Right-handed alpha
Helix 48
AF3
C
61 67Right-handed alpha
Helix 49
AF4
C
93 102Right-handed alpha
Helix 50
AF5
C
110 115Right-handed alpha
Helix 51
AF6
C
115 126Right-handed alpha
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There are 10 sheets in PDB entry 6QX3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
3 7first strand
Strand 2
O
18 25anti-parallel
Strand 3
O
78 83anti-parallel
Strand 4
O
68 73anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
58 60first strand
Strand 2
O
46 51anti-parallel
Strand 3
O
34 39anti-parallel
Strand 4
O
93 95anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
64 65anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
135 137anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 227first strand
Strand 2
B
241 243anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 442first strand
Strand 2
B
446 452anti-parallel
Strand 3
B
300 305anti-parallel
Strand 4
B
483 486anti-parallel
Strand 5
A
679 680anti-parallel
Strand 6
A
258 259anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 350first strand
Strand 2
B
400 402anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 359first strand
Strand 2
B
364 367anti-parallel
Strand 3
A
377 379parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 324first strand
Strand 2
A
541 547anti-parallel
Strand 3
A
560 567anti-parallel
Strand 4
A
520 526anti-parallel
Strand 5
A
496 506anti-parallel
Strand 6
A
483 490anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 58first strand
Strand 2
C
89 91anti-parallel
Strand 3
C
79 80anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il