Analysis of interatomic Contacts of Structural Units in PDB entry:
6QXE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QXE entry

There are 10 chains in PDB entry 6QXE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	GLN 1	THR 121
O	GLN 1	THR 121
A	GLU 203	ARG 716
B	MET 1	ASN 671
C	LYS 54	LYS 126
D	A 1	G 12
E	GLU 203	ARG 716
F	MET 1	ASN 671
G	LYS 54	LYS 126
H	A 1	G 12

There are 94 helices in PDB entry 6QXE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	28	32	Right-handed 310
Helix 2	AA2	M	87	91	Right-handed 310
Helix 3	AA3	O	28	32	Right-handed 310
Helix 4	AA4	O	87	91	Right-handed 310
Helix 5	AA5	A	209	219	Right-handed alpha
Helix 6	AA6	A	225	235	Right-handed alpha
Helix 7	AA7	A	240	249	Right-handed alpha
Helix 8	AA8	A	302	314	Right-handed alpha
Helix 9	AA9	A	330	351	Right-handed alpha
Helix 10	AB1	A	363	371	Right-handed alpha
Helix 11	AB2	A	380	386	Right-handed alpha
Helix 12	AB3	A	405	416	Right-handed alpha
Helix 13	AB4	A	433	452	Right-handed alpha
Helix 14	AB5	A	454	476	Right-handed alpha
Helix 15	AB6	A	572	580	Right-handed alpha
Helix 16	AB7	A	581	603	Right-handed alpha
Helix 17	AB8	A	608	613	Right-handed alpha
Helix 18	AB9	A	632	650	Right-handed alpha
Helix 19	AC1	A	652	674	Right-handed alpha
Helix 20	AC2	A	683	694	Right-handed alpha
Helix 21	AC3	A	697	715	Right-handed alpha
Helix 22	AC4	B	7	12	Right-handed alpha
Helix 23	AC5	B	16	22	Right-handed 310
Helix 24	AC6	B	35	50	Right-handed alpha
Helix 25	AC7	B	84	99	Right-handed alpha
Helix 26	AC8	B	101	117	Right-handed alpha
Helix 27	AC9	B	118	122	Right-handed 310
Helix 28	AD1	B	138	153	Right-handed alpha
Helix 29	AD2	B	156	161	Right-handed alpha
Helix 30	AD3	B	163	175	Right-handed alpha
Helix 31	AD4	B	213	222	Right-handed alpha
Helix 32	AD5	B	245	266	Right-handed alpha
Helix 33	AD6	B	274	291	Right-handed alpha
Helix 34	AD7	B	308	313	Right-handed alpha
Helix 35	AD8	B	314	326	Right-handed alpha
Helix 36	AD9	B	330	345	Right-handed alpha
Helix 37	AE1	B	371	373	Right-handed 310
Helix 38	AE2	B	382	393	Right-handed alpha
Helix 39	AE3	B	414	427	Right-handed alpha
Helix 40	AE4	B	455	473	Right-handed alpha
Helix 41	AE5	B	521	536	Right-handed alpha
Helix 42	AE6	B	540	560	Right-handed alpha
Helix 43	AE7	B	572	583	Right-handed alpha
Helix 44	AE8	B	607	613	Right-handed alpha
Helix 45	AE9	B	614	616	Right-handed 310
Helix 46	AF1	B	617	625	Right-handed alpha
Helix 47	AF2	C	62	67	Right-handed alpha
Helix 48	AF3	C	92	100	Right-handed alpha
Helix 49	AF4	C	111	126	Right-handed alpha
Helix 50	AF5	E	209	219	Right-handed alpha
Helix 51	AF6	E	225	235	Right-handed alpha
Helix 52	AF7	E	240	249	Right-handed alpha
Helix 53	AF8	E	302	314	Right-handed alpha
Helix 54	AF9	E	330	351	Right-handed alpha
Helix 55	AG1	E	363	371	Right-handed alpha
Helix 56	AG2	E	380	386	Right-handed alpha
Helix 57	AG3	E	405	416	Right-handed alpha
Helix 58	AG4	E	433	452	Right-handed alpha
Helix 59	AG5	E	454	476	Right-handed alpha
Helix 60	AG6	E	572	580	Right-handed alpha
Helix 61	AG7	E	581	603	Right-handed alpha
Helix 62	AG8	E	608	613	Right-handed alpha
Helix 63	AG9	E	632	650	Right-handed alpha
Helix 64	AH1	E	652	674	Right-handed alpha
Helix 65	AH2	E	683	694	Right-handed alpha
Helix 66	AH3	E	697	715	Right-handed alpha
Helix 67	AH4	F	7	12	Right-handed alpha
Helix 68	AH5	F	16	22	Right-handed 310
Helix 69	AH6	F	35	50	Right-handed alpha
Helix 70	AH7	F	84	99	Right-handed alpha
Helix 71	AH8	F	101	117	Right-handed alpha
Helix 72	AH9	F	118	122	Right-handed 310
Helix 73	AI1	F	138	153	Right-handed alpha
Helix 74	AI2	F	156	161	Right-handed alpha
Helix 75	AI3	F	163	175	Right-handed alpha
Helix 76	AI4	F	213	222	Right-handed alpha
Helix 77	AI5	F	245	266	Right-handed alpha
Helix 78	AI6	F	274	291	Right-handed alpha
Helix 79	AI7	F	308	313	Right-handed alpha
Helix 80	AI8	F	314	326	Right-handed alpha
Helix 81	AI9	F	330	345	Right-handed alpha
Helix 82	AJ1	F	371	373	Right-handed 310
Helix 83	AJ2	F	382	393	Right-handed alpha
Helix 84	AJ3	F	414	427	Right-handed alpha
Helix 85	AJ4	F	455	473	Right-handed alpha
Helix 86	AJ5	F	521	536	Right-handed alpha
Helix 87	AJ6	F	540	560	Right-handed alpha
Helix 88	AJ7	F	572	583	Right-handed alpha
Helix 89	AJ8	F	607	613	Right-handed alpha
Helix 90	AJ9	F	614	616	Right-handed 310
Helix 91	AK1	F	617	625	Right-handed alpha
Helix 92	AK2	G	62	67	Right-handed alpha
Helix 93	AK3	G	92	100	Right-handed alpha
Helix 94	AK4	G	111	126	Right-handed alpha

There are 20 sheets in PDB entry 6QXE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	7	first strand
Strand 2	M	17	25	anti-parallel
Strand 3	M	78	84	anti-parallel
Strand 4	M	68	73	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	58	60	first strand
Strand 2	M	46	51	anti-parallel
Strand 3	M	34	39	anti-parallel
Strand 4	M	93	98	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	3	7	first strand
Strand 2	O	17	25	anti-parallel
Strand 3	O	78	84	anti-parallel
Strand 4	O	68	73	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	58	60	first strand
Strand 2	O	46	51	anti-parallel
Strand 3	O	34	39	anti-parallel
Strand 4	O	93	98	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	B	354	359	anti-parallel
Strand 3	B	365	369	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	490	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	519	526	anti-parallel
Strand 4	A	559	569	anti-parallel
Strand 5	A	542	548	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	631	first strand
Strand 2	A	619	624	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	64	66	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	397	first strand
Strand 2	B	400	401	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	441	first strand
Strand 2	B	448	452	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	668	first strand
Strand 2	C	57	59	anti-parallel
Strand 3	C	89	91	anti-parallel
Strand 4	C	78	79	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	390	391	first strand
Strand 2	F	354	359	anti-parallel
Strand 3	F	365	369	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	481	490	first strand
Strand 2	E	496	506	anti-parallel
Strand 3	E	519	526	anti-parallel
Strand 4	E	559	569	anti-parallel
Strand 5	E	542	548	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	627	631	first strand
Strand 2	E	619	624	anti-parallel
Strand 3	F	2	3	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	57	first strand
Strand 2	F	64	66	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	130	first strand
Strand 2	F	135	137	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	396	397	first strand
Strand 2	F	400	401	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	437	441	first strand
Strand 2	F	448	452	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	667	668	first strand
Strand 2	G	57	59	anti-parallel
Strand 3	G	89	91	anti-parallel
Strand 4	G	78	79	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QXE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QXE