Analysis of interatomic Contacts of Structural Units in PDB entry:
6QXP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QXP entry

There are 4 chains in PDB entry 6QXP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 44	ASN 388
B	VAL 42	ASN 381
C	ILE 40	LEU 386
D	VAL 42	PHE 328

There are117 helices in PDB entry 6QXP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	66	Right-handed alpha
Helix 2	AA2	A	74	78	Right-handed 310
Helix 3	AA3	A	82	86	Right-handed 310
Helix 4	AA4	A	118	124	Right-handed 310
Helix 5	AA5	A	142	148	Right-handed 310
Helix 6	AA6	A	167	172	Right-handed alpha
Helix 7	AA7	A	190	196	Right-handed alpha
Helix 8	AA8	A	215	219	Right-handed 310
Helix 9	AA9	A	236	244	Right-handed 310
Helix 10	AB1	A	261	267	Right-handed 310
Helix 11	AB2	A	285	291	Right-handed 310
Helix 12	AB3	A	309	315	Right-handed 310
Helix 13	AB4	B	50	66	Right-handed alpha
Helix 14	AB5	B	74	78	Right-handed 310
Helix 15	AB6	B	82	86	Right-handed 310
Helix 16	AB7	B	118	124	Right-handed 310
Helix 17	AB8	B	142	148	Right-handed 310
Helix 18	AB9	B	166	172	Right-handed 310
Helix 19	AC1	B	191	196	Right-handed alpha
Helix 20	AC2	B	215	219	Right-handed 310
Helix 21	AC3	B	236	243	Right-handed 310
Helix 22	AC4	B	261	267	Right-handed 310
Helix 23	AC5	B	285	291	Right-handed 310
Helix 24	AC6	B	309	315	Right-handed 310
Helix 25	AC7	C	50	65	Right-handed alpha
Helix 26	AC8	C	74	78	Right-handed 310
Helix 27	AC9	C	82	86	Right-handed 310
Helix 28	AD1	C	118	124	Right-handed 310
Helix 29	AD2	C	142	148	Right-handed 310
Helix 30	AD3	C	166	172	Right-handed 310
Helix 31	AD4	C	191	196	Right-handed alpha
Helix 32	AD5	C	215	219	Right-handed 310
Helix 33	AD6	C	236	244	Right-handed 310
Helix 34	AD7	C	261	267	Right-handed 310
Helix 35	AD8	C	285	291	Right-handed 310
Helix 36	AD9	C	309	315	Right-handed 310
Helix 37	AE1	D	50	66	Right-handed alpha
Helix 38	AE2	D	74	78	Right-handed 310
Helix 39	AE3	D	82	86	Right-handed 310
Helix 40	AE4	D	118	124	Right-handed 310
Helix 41	AE5	D	142	148	Right-handed 310
Helix 42	AE6	D	167	172	Right-handed alpha
Helix 43	AE7	D	191	196	Right-handed alpha
Helix 44	AE8	D	215	219	Right-handed 310
Helix 45	AE9	D	236	244	Right-handed 310
Helix 46	AF1	D	261	267	Right-handed 310
Helix 47	AF2	D	285	291	Right-handed 310
Helix 48	AF3	D	309	315	Right-handed 310
Helix 49	AF4	E	50	66	Right-handed alpha
Helix 50	AF5	E	74	78	Right-handed 310
Helix 51	AF6	E	82	86	Right-handed 310
Helix 52	AF7	E	118	124	Right-handed 310
Helix 53	AF8	E	142	148	Right-handed 310
Helix 54	AF9	E	167	172	Right-handed alpha
Helix 55	AG1	E	191	196	Right-handed alpha
Helix 56	AG2	E	215	219	Right-handed 310
Helix 57	AG3	E	236	244	Right-handed 310
Helix 58	AG4	E	261	267	Right-handed 310
Helix 59	AG5	E	285	291	Right-handed 310
Helix 60	AG6	E	309	315	Right-handed 310
Helix 61	AG7	E	336	340	Right-handed 310
Helix 62	AG8	E	360	365	Right-handed alpha
Helix 63	AG9	F	50	66	Right-handed alpha
Helix 64	AH1	F	74	78	Right-handed 310
Helix 65	AH2	F	82	86	Right-handed 310
Helix 66	AH3	F	118	124	Right-handed 310
Helix 67	AH4	F	142	148	Right-handed 310
Helix 68	AH5	F	167	172	Right-handed alpha
Helix 69	AH6	F	191	196	Right-handed alpha
Helix 70	AH7	F	215	219	Right-handed 310
Helix 71	AH8	F	236	244	Right-handed 310
Helix 72	AH9	F	261	267	Right-handed 310
Helix 73	AI1	F	285	291	Right-handed 310
Helix 74	AI2	F	310	314	Right-handed 310
Helix 75	AI3	G	50	66	Right-handed alpha
Helix 76	AI4	G	74	78	Right-handed 310
Helix 77	AI5	G	82	86	Right-handed 310
Helix 78	AI6	G	118	124	Right-handed 310
Helix 79	AI7	G	142	148	Right-handed 310
Helix 80	AI8	G	167	172	Right-handed alpha
Helix 81	AI9	G	191	196	Right-handed alpha
Helix 82	AJ1	G	215	219	Right-handed 310
Helix 83	AJ2	G	236	244	Right-handed 310
Helix 84	AJ3	G	261	267	Right-handed 310
Helix 85	AJ4	G	285	291	Right-handed 310
Helix 86	AJ5	G	309	315	Right-handed 310
Helix 87	AJ6	H	50	66	Right-handed alpha
Helix 88	AJ7	H	74	78	Right-handed 310
Helix 89	AJ8	H	82	86	Right-handed 310
Helix 90	AJ9	H	118	124	Right-handed 310
Helix 91	AK1	H	142	148	Right-handed 310
Helix 92	AK2	H	166	172	Right-handed 310
Helix 93	AK3	H	191	196	Right-handed alpha
Helix 94	AK4	H	213	219	Right-handed 310
Helix 95	AK5	H	236	243	Right-handed 310
Helix 96	AK6	H	261	267	Right-handed 310
Helix 97	AK7	H	285	291	Right-handed 310
Helix 98	AK8	H	310	315	Right-handed 310
Helix 99	AK9	I	1063	1070	Right-handed alpha
Helix 100	AL1	I	1082	1086	Right-handed 310
Helix 101	AL2	I	1101	1105	Right-handed 310
Helix 102	AL3	J	1063	1070	Right-handed alpha
Helix 103	AL4	J	1102	1106	Right-handed 310
Helix 104	AL5	K	1063	1068	Right-handed alpha
Helix 105	AL6	K	1101	1106	Right-handed 310
Helix 106	AL7	L	1063	1068	Right-handed alpha
Helix 107	AL8	L	1082	1086	Right-handed 310
Helix 108	AL9	L	1101	1105	Right-handed 310
Helix 109	AM1	M	1063	1068	Right-handed alpha
Helix 110	AM2	M	1101	1106	Right-handed 310
Helix 111	AM3	N	1063	1068	Right-handed alpha
Helix 112	AM4	N	1082	1086	Right-handed 310
Helix 113	AM5	O	1063	1068	Right-handed alpha
Helix 114	AM6	O	1101	1105	Right-handed 310
Helix 115	AM7	P	1063	1068	Right-handed alpha
Helix 116	AM8	P	1082	1086	Right-handed 310
Helix 117	AM9	P	1102	1106	Right-handed 310

There are 26 sheets in PDB entry 6QXP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	69	first strand
Strand 2	A	114	116	anti-parallel
Strand 3	A	136	139	parallel
Strand 4	A	160	164	parallel
Strand 5	A	184	186	parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	93	first strand
Strand 2	A	101	107	anti-parallel
Strand 3	A	129	131	parallel
Strand 4	A	153	155	parallel
Strand 5	A	177	179	parallel
Strand 6	A	200	202	parallel
Strand 7	A	223	225	parallel
Strand 8	A	248	250	parallel
Strand 9	A	272	274	parallel
Strand 10	A	296	298	parallel
Strand 11	A	320	322	parallel
Strand 12	A	344	346	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	233	first strand
Strand 2	A	254	258	parallel
Strand 3	A	279	282	parallel
Strand 4	A	303	304	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	69	first strand
Strand 2	B	114	115	anti-parallel
Strand 3	B	136	139	parallel
Strand 4	B	160	164	parallel
Strand 5	B	184	186	parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	93	first strand
Strand 2	B	101	107	anti-parallel
Strand 3	B	129	131	parallel
Strand 4	B	153	155	parallel
Strand 5	B	177	179	parallel
Strand 6	B	200	202	parallel
Strand 7	B	223	225	parallel
Strand 8	B	248	250	parallel
Strand 9	B	272	274	parallel
Strand 10	B	296	298	parallel
Strand 11	B	320	322	parallel
Strand 12	B	344	346	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	255	258	parallel
Strand 3	B	279	283	parallel
Strand 4	B	303	305	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	69	first strand
Strand 2	C	114	116	anti-parallel
Strand 3	C	136	139	parallel
Strand 4	C	160	164	parallel
Strand 5	C	184	186	parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	93	first strand
Strand 2	C	101	107	anti-parallel
Strand 3	C	129	131	parallel
Strand 4	C	153	155	parallel
Strand 5	C	177	179	parallel
Strand 6	C	200	202	parallel
Strand 7	C	223	225	parallel
Strand 8	C	248	250	parallel
Strand 9	C	272	274	parallel
Strand 10	C	296	298	parallel
Strand 11	C	320	322	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	258	first strand
Strand 2	C	279	283	parallel
Strand 3	C	303	305	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	69	first strand
Strand 2	D	114	115	anti-parallel
Strand 3	D	136	139	parallel
Strand 4	D	160	164	parallel
Strand 5	D	184	186	parallel

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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	93	first strand
Strand 2	D	101	107	anti-parallel
Strand 3	D	129	131	parallel
Strand 4	D	153	155	parallel
Strand 5	D	177	179	parallel
Strand 6	D	200	202	parallel
Strand 7	D	223	225	parallel
Strand 8	D	248	250	parallel
Strand 9	D	272	274	parallel
Strand 10	D	296	298	parallel
Strand 11	D	320	322	parallel
Strand 12	D	344	346	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	258	first strand
Strand 2	D	279	282	parallel
Strand 3	D	303	304	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	69	first strand
Strand 2	E	114	116	anti-parallel
Strand 3	E	136	139	parallel
Strand 4	E	160	164	parallel
Strand 5	E	184	188	parallel
Strand 6	E	207	209	parallel

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There are 12 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	93	first strand
Strand 2	E	101	107	anti-parallel
Strand 3	E	129	131	parallel
Strand 4	E	153	155	parallel
Strand 5	E	177	179	parallel
Strand 6	E	200	202	parallel
Strand 7	E	223	225	parallel
Strand 8	E	248	250	parallel
Strand 9	E	272	274	parallel
Strand 10	E	296	298	parallel
Strand 11	E	320	322	parallel
Strand 12	E	345	346	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	258	first strand
Strand 2	E	279	283	parallel
Strand 3	E	303	305	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	69	first strand
Strand 2	F	114	115	anti-parallel
Strand 3	F	136	139	parallel
Strand 4	F	160	164	parallel
Strand 5	F	184	186	parallel

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There are 12 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	93	first strand
Strand 2	F	101	107	anti-parallel
Strand 3	F	129	131	parallel
Strand 4	F	153	155	parallel
Strand 5	F	177	179	parallel
Strand 6	F	200	202	parallel
Strand 7	F	223	225	parallel
Strand 8	F	248	250	parallel
Strand 9	F	272	274	parallel
Strand 10	F	296	298	parallel
Strand 11	F	320	322	parallel
Strand 12	F	345	346	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	229	233	first strand
Strand 2	F	254	256	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	281	283	first strand
Strand 2	F	303	305	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	69	first strand
Strand 2	G	114	116	anti-parallel
Strand 3	G	136	139	parallel
Strand 4	G	160	164	parallel
Strand 5	G	184	188	parallel
Strand 6	G	207	209	parallel

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There are 12 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	89	93	first strand
Strand 2	G	101	107	anti-parallel
Strand 3	G	129	131	parallel
Strand 4	G	153	155	parallel
Strand 5	G	177	179	parallel
Strand 6	G	200	202	parallel
Strand 7	G	223	225	parallel
Strand 8	G	248	250	parallel
Strand 9	G	272	274	parallel
Strand 10	G	296	298	parallel
Strand 11	G	320	322	parallel
Strand 12	G	344	346	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	232	233	first strand
Strand 2	G	255	256	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	281	282	first strand
Strand 2	G	303	304	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	69	first strand
Strand 2	H	114	115	anti-parallel
Strand 3	H	136	139	parallel
Strand 4	H	160	164	parallel
Strand 5	H	184	186	parallel

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There are 12 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	89	93	first strand
Strand 2	H	101	107	anti-parallel
Strand 3	H	129	131	parallel
Strand 4	H	153	155	parallel
Strand 5	H	177	179	parallel
Strand 6	H	200	202	parallel
Strand 7	H	223	225	parallel
Strand 8	H	248	250	parallel
Strand 9	H	272	274	parallel
Strand 10	H	296	298	parallel
Strand 11	H	320	322	parallel
Strand 12	H	345	346	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	232	233	first strand
Strand 2	H	255	256	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QXP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QXP