Analysis of interatomic Contacts of Structural Units in PDB entry:
6QYC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QYC entry

There are 3 chains in PDB entry 6QYC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 46	MET 650
B	ALA 43	MET 650
C	GLN 47	MET 650

There are 72 helices in PDB entry 6QYC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	137	141	Right-handed 310
Helix 2	AA2	A	194	203	Right-handed alpha
Helix 3	AA3	A	204	208	Right-handed 310
Helix 4	AA4	A	209	213	Right-handed 310
Helix 5	AA5	A	216	224	Right-handed alpha
Helix 6	AA6	A	234	244	Right-handed alpha
Helix 7	AA7	A	248	257	Right-handed 310
Helix 8	AA8	A	268	273	Right-handed alpha
Helix 9	AA9	A	275	283	Right-handed alpha
Helix 10	AB1	A	302	307	Right-handed alpha
Helix 11	AB2	A	308	328	Right-handed alpha
Helix 12	AB3	A	359	365	Right-handed 310
Helix 13	AB4	A	428	431	Right-handed 310
Helix 14	AB5	A	485	493	Right-handed alpha
Helix 15	AB6	A	509	513	Right-handed 310
Helix 16	AB7	A	526	532	Right-handed 310
Helix 17	AB8	A	547	557	Right-handed alpha
Helix 18	AB9	A	564	568	Right-handed 310
Helix 19	AC1	A	573	580	Right-handed 310
Helix 20	AC2	A	592	599	Right-handed alpha
Helix 21	AC3	A	603	607	Right-handed 310
Helix 22	AC4	A	611	615	Right-handed 310
Helix 23	AC5	A	621	628	Right-handed alpha
Helix 24	AC6	A	633	638	Right-handed alpha
Helix 25	AC7	B	137	141	Right-handed 310
Helix 26	AC8	B	194	203	Right-handed alpha
Helix 27	AC9	B	204	208	Right-handed 310
Helix 28	AD1	B	209	213	Right-handed 310
Helix 29	AD2	B	216	224	Right-handed alpha
Helix 30	AD3	B	234	244	Right-handed alpha
Helix 31	AD4	B	248	257	Right-handed 310
Helix 32	AD5	B	268	273	Right-handed alpha
Helix 33	AD6	B	275	283	Right-handed alpha
Helix 34	AD7	B	302	307	Right-handed alpha
Helix 35	AD8	B	308	328	Right-handed alpha
Helix 36	AD9	B	359	365	Right-handed 310
Helix 37	AE1	B	428	431	Right-handed 310
Helix 38	AE2	B	485	493	Right-handed alpha
Helix 39	AE3	B	509	513	Right-handed 310
Helix 40	AE4	B	526	532	Right-handed 310
Helix 41	AE5	B	547	557	Right-handed alpha
Helix 42	AE6	B	564	568	Right-handed 310
Helix 43	AE7	B	573	580	Right-handed 310
Helix 44	AE8	B	592	599	Right-handed alpha
Helix 45	AE9	B	603	607	Right-handed 310
Helix 46	AF1	B	611	615	Right-handed 310
Helix 47	AF2	B	621	628	Right-handed alpha
Helix 48	AF3	B	633	637	Right-handed 310
Helix 49	AF4	C	137	141	Right-handed 310
Helix 50	AF5	C	194	203	Right-handed alpha
Helix 51	AF6	C	204	213	Right-handed 310
Helix 52	AF7	C	216	224	Right-handed alpha
Helix 53	AF8	C	234	244	Right-handed alpha
Helix 54	AF9	C	248	257	Right-handed 310
Helix 55	AG1	C	266	272	Right-handed 310
Helix 56	AG2	C	275	283	Right-handed alpha
Helix 57	AG3	C	302	307	Right-handed alpha
Helix 58	AG4	C	308	328	Right-handed alpha
Helix 59	AG5	C	359	365	Right-handed 310
Helix 60	AG6	C	428	431	Right-handed 310
Helix 61	AG7	C	484	493	Right-handed alpha
Helix 62	AG8	C	509	513	Right-handed 310
Helix 63	AG9	C	526	532	Right-handed 310
Helix 64	AH1	C	547	557	Right-handed alpha
Helix 65	AH2	C	564	568	Right-handed 310
Helix 66	AH3	C	573	580	Right-handed 310
Helix 67	AH4	C	592	599	Right-handed alpha
Helix 68	AH5	C	603	607	Right-handed 310
Helix 69	AH6	C	611	615	Right-handed 310
Helix 70	AH7	C	621	628	Right-handed alpha
Helix 71	AH8	C	629	632	Right-handed 310
Helix 72	AH9	C	633	637	Right-handed 310

There are 20 sheets in PDB entry 6QYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	59	first strand
Strand 2	A	62	70	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	121	124	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	113	first strand
Strand 2	A	82	91	anti-parallel
Strand 3	A	151	158	anti-parallel
Strand 4	A	172	179	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	338	first strand
Strand 2	A	344	351	anti-parallel
Strand 3	A	357	358	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	338	first strand
Strand 2	A	344	351	anti-parallel
Strand 3	A	416	420	anti-parallel
Strand 4	A	410	413	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	396	402	anti-parallel
Strand 3	A	367	376	anti-parallel
Strand 4	A	433	445	anti-parallel
Strand 5	A	457	460	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	449	first strand
Strand 2	A	433	445	anti-parallel
Strand 3	A	464	469	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	586	first strand
Strand 2	A	589	591	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	59	first strand
Strand 2	B	62	70	anti-parallel
Strand 3	B	129	133	anti-parallel
Strand 4	B	121	124	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	113	first strand
Strand 2	B	82	91	anti-parallel
Strand 3	B	151	158	anti-parallel
Strand 4	B	172	178	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	338	first strand
Strand 2	B	344	351	anti-parallel
Strand 3	B	357	358	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	338	first strand
Strand 2	B	344	351	anti-parallel
Strand 3	B	416	420	anti-parallel
Strand 4	B	410	413	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	396	402	anti-parallel
Strand 3	B	367	376	anti-parallel
Strand 4	B	433	445	anti-parallel
Strand 5	B	457	460	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	449	first strand
Strand 2	B	433	445	anti-parallel
Strand 3	B	464	469	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	586	first strand
Strand 2	B	589	591	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	59	first strand
Strand 2	C	62	70	anti-parallel
Strand 3	C	129	133	anti-parallel
Strand 4	C	121	124	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	113	first strand
Strand 2	C	82	91	anti-parallel
Strand 3	C	151	158	anti-parallel
Strand 4	C	172	178	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	338	first strand
Strand 2	C	344	351	anti-parallel
Strand 3	C	416	420	anti-parallel
Strand 4	C	410	413	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	406	first strand
Strand 2	C	396	402	anti-parallel
Strand 3	C	367	376	anti-parallel
Strand 4	C	433	445	anti-parallel
Strand 5	C	457	460	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	449	first strand
Strand 2	C	433	445	anti-parallel
Strand 3	C	464	469	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	583	586	first strand
Strand 2	C	589	591	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QYC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QYC