Analysis of interatomic Contacts of Structural Units in PDB entry:
6QYX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QYX entry

There is 1 chain in PDB entry 6QYX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4PRO 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6QYX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 78Right-handed alpha
Helix 2
AA2
A
113 118Right-handed alpha
Helix 3
AA3
A
123 144Right-handed alpha
Helix 4
AA4
A
152 154Right-handed 310
Helix 5
AA5
A
190 195Right-handed 310
Helix 6
AA6
A
196 201Right-handed alpha
Helix 7
AA7
A
209 225Right-handed alpha
Helix 8
AA8
A
233 246Right-handed alpha
Helix 9
AA9
A
249 254Right-handed alpha
Helix 10
AB1
A
258 268Right-handed alpha
Helix 11
AB2
A
275 279Right-handed 310
Helix 12
AB3
A
284 295Right-handed alpha
Helix 13
AB4
A
298 302Right-handed 310
Helix 14
AB5
A
304 310Right-handed alpha
Helix 15
AB6
A
311 315Right-handed 310
Helix 16
AB7
A
331 336Right-handed 310
Helix 17
AB8
A
339 353Right-handed alpha
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There are 3 sheets in PDB entry 6QYX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
17 21anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 33first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
49 54anti-parallel
Strand 4
A
103 107anti-parallel
Strand 5
A
88 90anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
156 158anti-parallel
Strand 3
A
164 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il