Analysis of interatomic Contacts of Structural Units in PDB entry:
6QZK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QZK entry

There are 3 chains in PDB entry 6QZK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 748
B
 C 1 A 17
C
 A -18 T -1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6QZK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 49Right-handed alpha
Helix 2
AA2
A
87 90Right-handed 310
Helix 3
AA3
A
91 109Right-handed alpha
Helix 4
AA4
A
181 189Right-handed alpha
Helix 5
AA5
A
230 238Right-handed alpha
Helix 6
AA6
A
240 244Right-handed 310
Helix 7
AA7
A
248 253Right-handed alpha
Helix 8
AA8
A
278 286Right-handed alpha
Helix 9
AA9
A
286 298Right-handed alpha
Helix 10
AB1
A
300 316Right-handed alpha
Helix 11
AB2
A
358 360Right-handed 310
Helix 12
AB3
A
361 366Right-handed alpha
Helix 13
AB4
A
386 401Right-handed alpha
Helix 14
AB5
A
436 447Right-handed alpha
Helix 15
AB6
A
448 450Right-handed 310
Helix 16
AB7
A
471 482Right-handed alpha
Helix 17
AB8
A
491 498Right-handed alpha
Helix 18
AB9
A
504 519Right-handed alpha
Helix 19
AC1
A
580 600Right-handed alpha
Helix 20
AC2
A
617 629Right-handed alpha
Helix 21
AC3
A
695 709Right-handed alpha
Helix 22
AC4
A
720 732Right-handed alpha
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There are 9 sheets in PDB entry 6QZK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
645 649anti-parallel
Strand 3
A
652 654anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
126 129anti-parallel
Strand 3
A
149 160anti-parallel
Strand 4
A
142 143anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
126 129anti-parallel
Strand 3
A
149 160anti-parallel
Strand 4
A
166 177anti-parallel
Strand 5
A
8 11anti-parallel
Strand 6
A
326 330anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
60 63anti-parallel
Strand 3
A
18 27anti-parallel
Strand 4
A
76 79anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
60 63anti-parallel
Strand 3
A
18 27anti-parallel
Strand 4
A
83 86anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 268first strand
Strand 2
A
255 261anti-parallel
Strand 3
A
208 217anti-parallel
Strand 4
A
196 199anti-parallel
Strand 5
A
273 275anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 343first strand
Strand 2
A
660 664anti-parallel
Strand 3
A
667 670anti-parallel
Strand 4
A
685 691anti-parallel
Strand 5
A
631 638anti-parallel
Strand 6
A
605 610parallel
Strand 7
A
536 540parallel
Strand 8
A
554 557anti-parallel
Strand 9
A
565 568anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 350first strand
Strand 2
A
526 527anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 432first strand
Strand 2
A
378 382parallel
Strand 3
A
456 460parallel
Strand 4
A
489 490parallel
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