Analysis of interatomic Contacts of Structural Units in PDB entry:
6R15


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6R15 entry

There are 2 chains in PDB entry 6R15 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 615LYS 812
B
 GLU 8769LEU 8797
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6R15. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
618 635Right-handed alpha
Helix 2
AA2
A
645 649Right-handed 310
Helix 3
AA3
A
681 687Right-handed 310
Helix 4
AA4
A
724 728Right-handed 310
Helix 5
AA5
B
8770 8777Right-handed alpha
Helix 6
AA6
B
8778 8783Right-handed 310
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There are 4 sheets in PDB entry 6R15. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
651 654first strand
Strand 2
A
703 721anti-parallel
Strand 3
A
768 772anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
754 760first strand
Strand 2
A
739 745anti-parallel
Strand 3
A
782 789anti-parallel
Strand 4
A
703 721anti-parallel
Strand 5
A
803 810anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
667 670first strand
Strand 2
A
673 677anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 699first strand
Strand 2
A
798 801anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il