Analysis of interatomic Contacts of Structural Units in PDB entry:
6R16

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6R16 entry

There are 10 chains in PDB entry 6R16 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 618	LYS 812
B	THR 618	VAL 811
C	THR 618	VAL 811
D	THR 618	LYS 812
E	THR 618	VAL 811
F	THR 618	VAL 811
G	GLY 379	VAL 404
H	GLY 379	VAL 404
I	PRO 380	VAL 404
J	GLY 378	TYR 392

There are 23 helices in PDB entry 6R16. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	618	635	Right-handed alpha
Helix 2	AA2	A	654	657	Right-handed 310
Helix 3	AA3	A	681	687	Right-handed 310
Helix 4	AA4	A	724	728	Right-handed 310
Helix 5	AA5	B	620	635	Right-handed alpha
Helix 6	AA6	B	654	657	Right-handed 310
Helix 7	AA7	B	681	687	Right-handed 310
Helix 8	AA8	B	724	728	Right-handed 310
Helix 9	AA9	C	619	635	Right-handed alpha
Helix 10	AB1	C	654	657	Right-handed 310
Helix 11	AB2	C	681	687	Right-handed 310
Helix 12	AB3	C	724	728	Right-handed 310
Helix 13	AB4	D	619	635	Right-handed alpha
Helix 14	AB5	D	681	687	Right-handed 310
Helix 15	AB6	D	724	728	Right-handed 310
Helix 16	AB7	E	619	635	Right-handed alpha
Helix 17	AB8	E	654	657	Right-handed 310
Helix 18	AB9	E	681	687	Right-handed 310
Helix 19	AC1	E	724	728	Right-handed 310
Helix 20	AC2	F	619	635	Right-handed alpha
Helix 21	AC3	F	654	657	Right-handed 310
Helix 22	AC4	F	681	687	Right-handed 310
Helix 23	AC5	F	724	728	Right-handed 310

There are 24 sheets in PDB entry 6R16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	652	first strand
Strand 2	A	703	721	anti-parallel
Strand 3	A	768	772	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	754	760	first strand
Strand 2	A	737	745	anti-parallel
Strand 3	A	782	792	anti-parallel
Strand 4	A	703	721	anti-parallel
Strand 5	A	803	810	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	678	first strand
Strand 2	A	666	670	anti-parallel
Strand 3	I	393	397	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	696	699	first strand
Strand 2	A	798	801	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	652	first strand
Strand 2	B	703	721	anti-parallel
Strand 3	B	768	772	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	754	760	first strand
Strand 2	B	737	745	anti-parallel
Strand 3	B	782	792	anti-parallel
Strand 4	B	703	721	anti-parallel
Strand 5	B	803	810	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	673	678	first strand
Strand 2	B	666	670	anti-parallel
Strand 3	J	393	397	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	696	699	first strand
Strand 2	B	798	801	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	652	first strand
Strand 2	C	703	721	anti-parallel
Strand 3	C	768	772	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	754	760	first strand
Strand 2	C	737	745	anti-parallel
Strand 3	C	782	792	anti-parallel
Strand 4	C	703	721	anti-parallel
Strand 5	C	803	810	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	678	first strand
Strand 2	C	666	670	anti-parallel
Strand 3	H	393	397	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	696	699	first strand
Strand 2	C	798	801	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	651	654	first strand
Strand 2	D	703	721	anti-parallel
Strand 3	D	768	772	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	754	760	first strand
Strand 2	D	737	745	anti-parallel
Strand 3	D	782	792	anti-parallel
Strand 4	D	703	721	anti-parallel
Strand 5	D	803	810	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	673	678	first strand
Strand 2	D	666	670	anti-parallel
Strand 3	K	393	397	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	696	699	first strand
Strand 2	D	798	801	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	651	652	first strand
Strand 2	E	703	721	anti-parallel
Strand 3	E	768	772	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	754	760	first strand
Strand 2	E	737	745	anti-parallel
Strand 3	E	782	792	anti-parallel
Strand 4	E	703	721	anti-parallel
Strand 5	E	803	810	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	673	677	first strand
Strand 2	E	666	670	anti-parallel
Strand 3	G	393	397	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	696	699	first strand
Strand 2	E	798	801	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	651	652	first strand
Strand 2	F	703	721	anti-parallel
Strand 3	F	768	772	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	754	760	first strand
Strand 2	F	737	745	anti-parallel
Strand 3	F	782	792	anti-parallel
Strand 4	F	703	721	anti-parallel
Strand 5	F	803	810	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	673	677	first strand
Strand 2	F	666	670	anti-parallel
Strand 3	L	393	397	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	696	699	first strand
Strand 2	F	798	801	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6R16

Analysis of interatomic Contacts of Structural Units in PDB entry:
6R16