Analysis of interatomic Contacts of Structural Units in PDB entry:
6R1G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6R1G entry

There are 2 chains in PDB entry 6R1G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 47ASN 194
B
 LYS 47ASN 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6R1G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 61Right-handed alpha
Helix 2
AA2
A
65 67Right-handed 310
Helix 3
AA3
A
68 74Right-handed alpha
Helix 4
AA4
A
144 149Right-handed 310
Helix 5
AA5
A
168 189Right-handed alpha
Helix 6
AA6
A
190 192Right-handed 310
Helix 7
AA7
B
49 61Right-handed alpha
Helix 8
AA8
B
65 67Right-handed 310
Helix 9
AA9
B
68 74Right-handed alpha
Helix 10
AB1
B
144 149Right-handed 310
Helix 11
AB2
B
168 189Right-handed alpha
Helix 12
AB3
B
190 192Right-handed 310
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There are 4 sheets in PDB entry 6R1G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
77 84anti-parallel
Strand 3
A
99 104anti-parallel
Strand 4
A
107 116anti-parallel
Strand 5
A
119 127anti-parallel
Strand 6
A
134 140anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
159 160anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
77 84anti-parallel
Strand 3
B
99 104anti-parallel
Strand 4
B
107 116anti-parallel
Strand 5
B
119 127anti-parallel
Strand 6
B
134 140anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 156first strand
Strand 2
B
159 160anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il