Analysis of interatomic Contacts of Structural Units in PDB entry:
6R1N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6R1N entry

There is 1 chain in PDB entry 6R1N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6R1N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 10Right-handed alpha
Helix 2
AA2
A
10 21Right-handed alpha
Helix 3
AA3
A
26 66Right-handed alpha
Helix 4
AA4
A
70 102Right-handed alpha
Helix 5
AA5
A
117 121Right-handed 310
Helix 6
AA6
A
139 147Right-handed alpha
Helix 7
AA7
A
152 160Right-handed alpha
Helix 8
AA8
A
168 188Right-handed alpha
Helix 9
AA9
A
201 208Right-handed alpha
Helix 10
AB1
A
214 218Right-handed 310
Helix 11
AB2
A
232 239Right-handed alpha
Helix 12
AB3
A
291 293Right-handed 310
Helix 13
AB4
A
294 313Right-handed alpha
Helix 14
AB5
A
358 365Right-handed alpha
Helix 15
AB6
A
389 400Right-handed alpha
Helix 16
AB7
A
410 418Right-handed 310
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There are 5 sheets in PDB entry 6R1N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
317 321anti-parallel
Strand 3
A
333 340anti-parallel
Strand 4
A
347 355anti-parallel
Strand 5
A
380 388anti-parallel
Strand 6
A
280 290anti-parallel
Strand 7
A
252 261anti-parallel
Strand 8
A
192 193parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
165 166anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
226 228anti-parallel
Strand 3
A
220 221anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 245first strand
Strand 2
A
366 368parallel
Strand 3
A
377 378anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
422 423anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il