Analysis of interatomic Contacts of Structural Units in PDB entry:
6R1O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6R1O entry

There is 1 chain in PDB entry 6R1O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 6R1O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 10Right-handed alpha
Helix 2
AA2
A
10 21Right-handed alpha
Helix 3
AA3
A
26 65Right-handed alpha
Helix 4
AA4
A
69 101Right-handed alpha
Helix 5
AA5
A
116 120Right-handed 310
Helix 6
AA6
A
138 146Right-handed alpha
Helix 7
AA7
A
151 158Right-handed alpha
Helix 8
AA8
A
166 187Right-handed alpha
Helix 9
AA9
A
200 207Right-handed alpha
Helix 10
AB1
A
213 217Right-handed 310
Helix 11
AB2
A
223 227Right-handed 310
Helix 12
AB3
A
238 245Right-handed alpha
Helix 13
AB4
A
254 256Right-handed 310
Helix 14
AB5
A
300 319Right-handed alpha
Helix 15
AB6
A
329 333Right-handed 310
Helix 16
AB7
A
348 351Right-handed 310
Helix 17
AB8
A
364 371Right-handed alpha
Helix 18
AB9
A
395 406Right-handed alpha
Helix 19
AC1
A
416 424Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 6R1O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 126first strand
Strand 2
A
323 327anti-parallel
Strand 3
A
339 347anti-parallel
Strand 4
A
352 361anti-parallel
Strand 5
A
386 394anti-parallel
Strand 6
A
286 296anti-parallel
Strand 7
A
258 267anti-parallel
Strand 8
A
191 192parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
164 165anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
233 234anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
373 375parallel
Strand 3
A
382 384anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
428 429anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il