Analysis of interatomic Contacts of Structural Units in PDB entry:
6R29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6R29 entry

There are 2 chains in PDB entry 6R29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 365GLY 1227
B
 GLY 360GLN 797
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 6R29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
365 381Right-handed alpha
Helix 2
AA2
A
382 385Right-handed 310
Helix 3
AA3
A
411 416Right-handed 310
Helix 4
AA4
A
432 444Right-handed alpha
Helix 5
AA5
A
456 468Right-handed alpha
Helix 6
AA6
A
475 500Right-handed alpha
Helix 7
AA7
A
513 528Right-handed alpha
Helix 8
AA8
A
541 549Right-handed alpha
Helix 9
AA9
A
553 563Right-handed alpha
Helix 10
AB1
A
576 580Right-handed 310
Helix 11
AB2
A
608 625Right-handed alpha
Helix 12
AB3
A
645 651Right-handed alpha
Helix 13
AB4
A
651 659Right-handed alpha
Helix 14
AB5
A
685 690Right-handed alpha
Helix 15
AB6
A
696 703Right-handed 310
Helix 16
AB7
A
713 732Right-handed alpha
Helix 17
AB8
A
752 756Right-handed 310
Helix 18
AB9
A
757 765Right-handed alpha
Helix 19
AC1
A
769 781Right-handed alpha
Helix 20
AC2
A
785 809Right-handed alpha
Helix 21
AC3
A
821 825Right-handed 310
Helix 22
AC4
A
836 847Right-handed alpha
Helix 23
AC5
A
860 874Right-handed alpha
Helix 24
AC6
A
877 892Right-handed alpha
Helix 25
AC7
A
925 932Right-handed 310
Helix 26
AC8
A
952 966Right-handed alpha
Helix 27
AC9
A
977 983Right-handed 310
Helix 28
AD1
A
984 991Right-handed alpha
Helix 29
AD2
A
994 1000Right-handed alpha
Helix 30
AD3
A
1024 1032Right-handed alpha
Helix 31
AD4
A
1044 1058Right-handed alpha
Helix 32
AD5
A
1070 1075Right-handed 310
Helix 33
AD6
A
1081 1087Right-handed alpha
Helix 34
AD7
A
1096 1101Right-handed alpha
Helix 35
AD8
A
1105 1109Right-handed 310
Helix 36
AD9
A
1118 1131Right-handed alpha
Helix 37
AE1
A
1147 1156Right-handed alpha
Helix 38
AE2
A
1176 1188Right-handed alpha
Helix 39
AE3
A
1188 1193Right-handed alpha
Helix 40
AE4
A
1210 1226Right-handed alpha
Helix 41
AE5
B
361 381Right-handed alpha
Helix 42
AE6
B
382 385Right-handed 310
Helix 43
AE7
B
411 415Right-handed 310
Helix 44
AE8
B
432 444Right-handed alpha
Helix 45
AE9
B
456 468Right-handed alpha
Helix 46
AF1
B
475 500Right-handed alpha
Helix 47
AF2
B
513 528Right-handed alpha
Helix 48
AF3
B
541 549Right-handed alpha
Helix 49
AF4
B
553 563Right-handed alpha
Helix 50
AF5
B
576 580Right-handed 310
Helix 51
AF6
B
608 625Right-handed alpha
Helix 52
AF7
B
645 651Right-handed alpha
Helix 53
AF8
B
651 659Right-handed alpha
Helix 54
AF9
B
685 690Right-handed alpha
Helix 55
AG1
B
696 703Right-handed 310
Helix 56
AG2
B
713 732Right-handed alpha
Helix 57
AG3
B
752 756Right-handed 310
Helix 58
AG4
B
757 765Right-handed alpha
Helix 59
AG5
B
769 781Right-handed alpha
Helix 60
AG6
B
785 809Right-handed alpha
Helix 61
AG7
B
821 825Right-handed 310
Helix 62
AG8
B
836 847Right-handed alpha
Helix 63
AG9
B
860 874Right-handed alpha
Helix 64
AH1
B
877 892Right-handed alpha
Helix 65
AH2
B
925 932Right-handed 310
Helix 66
AH3
B
952 966Right-handed alpha
Helix 67
AH4
B
977 983Right-handed 310
Helix 68
AH5
B
984 991Right-handed alpha
Helix 69
AH6
B
994 1000Right-handed alpha
Helix 70
AH7
B
1024 1032Right-handed alpha
Helix 71
AH8
B
1044 1058Right-handed alpha
Helix 72
AH9
B
1070 1075Right-handed 310
Helix 73
AI1
B
1081 1087Right-handed alpha
Helix 74
AI2
B
1096 1101Right-handed alpha
Helix 75
AI3
B
1105 1109Right-handed 310
Helix 76
AI4
B
1118 1130Right-handed alpha
Helix 77
AI5
B
1147 1156Right-handed alpha
Helix 78
AI6
B
1176 1188Right-handed alpha
Helix 79
AI7
B
1188 1193Right-handed alpha
Helix 80
AI8
B
1210 1226Right-handed alpha
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There are 10 sheets in PDB entry 6R29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 423first strand
Strand 2
A
426 431anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 450first strand
Strand 2
A
706 710anti-parallel
Strand 3
A
735 740parallel
Strand 4
A
672 677parallel
Strand 5
A
637 644parallel
Strand 6
A
532 536parallel
Strand 7
A
594 599parallel
Strand 8
A
582 587anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
942 947first strand
Strand 2
A
895 900parallel
Strand 3
A
970 974parallel
Strand 4
A
1006 1010parallel
Strand 5
A
1064 1068parallel
Strand 6
A
1038 1040parallel
Strand 7
A
1142 1144anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
915 916first strand
Strand 2
A
923 924anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1093 1094first strand
Strand 2
A
1135 1140anti-parallel
Strand 3
A
1111 1115parallel
Strand 4
A
1163 1171parallel
Strand 5
A
1196 1200parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
418 421first strand
Strand 2
B
428 431anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
447 450first strand
Strand 2
B
706 710anti-parallel
Strand 3
B
735 740parallel
Strand 4
B
672 677parallel
Strand 5
B
637 644parallel
Strand 6
B
532 536parallel
Strand 7
B
594 599parallel
Strand 8
B
582 587anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
942 947first strand
Strand 2
B
895 900parallel
Strand 3
B
970 974parallel
Strand 4
B
1006 1010parallel
Strand 5
B
1064 1068parallel
Strand 6
B
1038 1040parallel
Strand 7
B
1142 1144anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
915 916first strand
Strand 2
B
923 924anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1093 1094first strand
Strand 2
B
1135 1140anti-parallel
Strand 3
B
1111 1115parallel
Strand 4
B
1163 1171parallel
Strand 5
B
1196 1200parallel
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