Analysis of interatomic Contacts of Structural Units in PDB entry:
6R2D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6R2D entry

There are 2 chains in PDB entry 6R2D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 366	GLY 1227
B	ASP 365	GLN 901

There are158 helices in PDB entry 6R2D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	366	381	Right-handed alpha
Helix 2	AA2	A	382	384	Right-handed 310
Helix 3	AA3	A	413	416	Right-handed 310
Helix 4	AA4	A	432	444	Right-handed alpha
Helix 5	AA5	A	456	468	Right-handed alpha
Helix 6	AA6	A	475	500	Right-handed alpha
Helix 7	AA7	A	503	507	Right-handed 310
Helix 8	AA8	A	513	528	Right-handed alpha
Helix 9	AA9	A	541	549	Right-handed alpha
Helix 10	AB1	A	553	558	Right-handed alpha
Helix 11	AB2	A	575	579	Right-handed 310
Helix 12	AB3	A	609	624	Right-handed alpha
Helix 13	AB4	A	645	651	Right-handed alpha
Helix 14	AB5	A	651	659	Right-handed alpha
Helix 15	AB6	A	685	689	Right-handed 310
Helix 16	AB7	A	696	703	Right-handed 310
Helix 17	AB8	A	713	732	Right-handed alpha
Helix 18	AB9	A	752	756	Right-handed 310
Helix 19	AC1	A	757	767	Right-handed alpha
Helix 20	AC2	A	769	781	Right-handed alpha
Helix 21	AC3	A	785	813	Right-handed alpha
Helix 22	AC4	A	836	847	Right-handed alpha
Helix 23	AC5	A	860	874	Right-handed alpha
Helix 24	AC6	A	877	892	Right-handed alpha
Helix 25	AC7	A	925	932	Right-handed 310
Helix 26	AC8	A	952	966	Right-handed alpha
Helix 27	AC9	A	977	983	Right-handed 310
Helix 28	AD1	A	984	991	Right-handed alpha
Helix 29	AD2	A	994	1000	Right-handed alpha
Helix 30	AD3	A	1024	1032	Right-handed alpha
Helix 31	AD4	A	1044	1058	Right-handed alpha
Helix 32	AD5	A	1070	1075	Right-handed 310
Helix 33	AD6	A	1082	1087	Right-handed alpha
Helix 34	AD7	A	1096	1101	Right-handed alpha
Helix 35	AD8	A	1105	1109	Right-handed 310
Helix 36	AD9	A	1118	1131	Right-handed alpha
Helix 37	AE1	A	1147	1156	Right-handed alpha
Helix 38	AE2	A	1176	1188	Right-handed alpha
Helix 39	AE3	A	1188	1193	Right-handed alpha
Helix 40	AE4	A	1210	1226	Right-handed alpha
Helix 41	AE5	B	366	381	Right-handed alpha
Helix 42	AE6	B	382	384	Right-handed 310
Helix 43	AE7	B	413	416	Right-handed 310
Helix 44	AE8	B	432	444	Right-handed alpha
Helix 45	AE9	B	456	468	Right-handed alpha
Helix 46	AF1	B	475	500	Right-handed alpha
Helix 47	AF2	B	503	507	Right-handed 310
Helix 48	AF3	B	513	528	Right-handed alpha
Helix 49	AF4	B	541	549	Right-handed alpha
Helix 50	AF5	B	553	558	Right-handed alpha
Helix 51	AF6	B	575	579	Right-handed 310
Helix 52	AF7	B	609	624	Right-handed alpha
Helix 53	AF8	B	645	651	Right-handed alpha
Helix 54	AF9	B	651	659	Right-handed alpha
Helix 55	AG1	B	685	689	Right-handed 310
Helix 56	AG2	B	696	703	Right-handed 310
Helix 57	AG3	B	713	732	Right-handed alpha
Helix 58	AG4	B	752	756	Right-handed 310
Helix 59	AG5	B	757	766	Right-handed alpha
Helix 60	AG6	B	769	781	Right-handed alpha
Helix 61	AG7	B	785	813	Right-handed alpha
Helix 62	AG8	B	836	847	Right-handed alpha
Helix 63	AG9	B	860	874	Right-handed alpha
Helix 64	AH1	B	877	892	Right-handed alpha
Helix 65	AH2	B	925	932	Right-handed 310
Helix 66	AH3	B	952	966	Right-handed alpha
Helix 67	AH4	B	977	983	Right-handed 310
Helix 68	AH5	B	984	991	Right-handed alpha
Helix 69	AH6	B	994	1000	Right-handed alpha
Helix 70	AH7	B	1024	1032	Right-handed alpha
Helix 71	AH8	B	1044	1058	Right-handed alpha
Helix 72	AH9	B	1070	1075	Right-handed 310
Helix 73	AI1	B	1082	1087	Right-handed alpha
Helix 74	AI2	B	1096	1101	Right-handed alpha
Helix 75	AI3	B	1105	1109	Right-handed 310
Helix 76	AI4	B	1118	1131	Right-handed alpha
Helix 77	AI5	B	1147	1156	Right-handed alpha
Helix 78	AI6	B	1176	1188	Right-handed alpha
Helix 79	AI7	B	1188	1193	Right-handed alpha
Helix 80	AI8	B	1210	1226	Right-handed alpha
Helix 81	AI9	C	368	381	Right-handed alpha
Helix 82	AJ1	C	382	384	Right-handed 310
Helix 83	AJ2	C	411	417	Right-handed 310
Helix 84	AJ3	C	431	444	Right-handed alpha
Helix 85	AJ4	C	456	468	Right-handed alpha
Helix 86	AJ5	C	475	500	Right-handed alpha
Helix 87	AJ6	C	503	507	Right-handed 310
Helix 88	AJ7	C	513	528	Right-handed alpha
Helix 89	AJ8	C	541	549	Right-handed alpha
Helix 90	AJ9	C	553	558	Right-handed alpha
Helix 91	AK1	C	609	624	Right-handed alpha
Helix 92	AK2	C	645	651	Right-handed alpha
Helix 93	AK3	C	651	659	Right-handed alpha
Helix 94	AK4	C	685	689	Right-handed 310
Helix 95	AK5	C	696	703	Right-handed 310
Helix 96	AK6	C	713	732	Right-handed alpha
Helix 97	AK7	C	757	765	Right-handed alpha
Helix 98	AK8	C	769	781	Right-handed alpha
Helix 99	AK9	C	785	814	Right-handed alpha
Helix 100	AL1	C	836	847	Right-handed alpha
Helix 101	AL2	C	860	874	Right-handed alpha
Helix 102	AL3	C	877	892	Right-handed alpha
Helix 103	AL4	C	925	932	Right-handed 310
Helix 104	AL5	C	952	966	Right-handed alpha
Helix 105	AL6	C	977	983	Right-handed 310
Helix 106	AL7	C	984	991	Right-handed alpha
Helix 107	AL8	C	994	1000	Right-handed alpha
Helix 108	AL9	C	1024	1032	Right-handed alpha
Helix 109	AM1	C	1044	1058	Right-handed alpha
Helix 110	AM2	C	1070	1075	Right-handed 310
Helix 111	AM3	C	1082	1087	Right-handed alpha
Helix 112	AM4	C	1096	1101	Right-handed alpha
Helix 113	AM5	C	1105	1109	Right-handed 310
Helix 114	AM6	C	1118	1131	Right-handed alpha
Helix 115	AM7	C	1147	1156	Right-handed alpha
Helix 116	AM8	C	1176	1188	Right-handed alpha
Helix 117	AM9	C	1188	1193	Right-handed alpha
Helix 118	AN1	C	1210	1226	Right-handed alpha
Helix 119	AN2	D	368	381	Right-handed alpha
Helix 120	AN3	D	382	384	Right-handed 310
Helix 121	AN4	D	413	417	Right-handed 310
Helix 122	AN5	D	431	444	Right-handed alpha
Helix 123	AN6	D	456	468	Right-handed alpha
Helix 124	AN7	D	475	500	Right-handed alpha
Helix 125	AN8	D	503	507	Right-handed 310
Helix 126	AN9	D	513	528	Right-handed alpha
Helix 127	AO1	D	541	549	Right-handed alpha
Helix 128	AO2	D	553	558	Right-handed alpha
Helix 129	AO3	D	574	579	Right-handed 310
Helix 130	AO4	D	609	624	Right-handed alpha
Helix 131	AO5	D	645	651	Right-handed alpha
Helix 132	AO6	D	651	659	Right-handed alpha
Helix 133	AO7	D	685	689	Right-handed 310
Helix 134	AO8	D	696	703	Right-handed 310
Helix 135	AO9	D	713	732	Right-handed alpha
Helix 136	AP1	D	752	756	Right-handed 310
Helix 137	AP2	D	757	767	Right-handed alpha
Helix 138	AP3	D	769	781	Right-handed alpha
Helix 139	AP4	D	785	814	Right-handed alpha
Helix 140	AP5	D	836	847	Right-handed alpha
Helix 141	AP6	D	860	874	Right-handed alpha
Helix 142	AP7	D	877	892	Right-handed alpha
Helix 143	AP8	D	925	932	Right-handed 310
Helix 144	AP9	D	952	966	Right-handed alpha
Helix 145	AQ1	D	977	983	Right-handed 310
Helix 146	AQ2	D	984	991	Right-handed alpha
Helix 147	AQ3	D	994	1000	Right-handed alpha
Helix 148	AQ4	D	1024	1032	Right-handed alpha
Helix 149	AQ5	D	1044	1058	Right-handed alpha
Helix 150	AQ6	D	1070	1075	Right-handed 310
Helix 151	AQ7	D	1082	1087	Right-handed alpha
Helix 152	AQ8	D	1096	1101	Right-handed alpha
Helix 153	AQ9	D	1105	1109	Right-handed 310
Helix 154	AR1	D	1118	1131	Right-handed alpha
Helix 155	AR2	D	1147	1156	Right-handed alpha
Helix 156	AR3	D	1176	1188	Right-handed alpha
Helix 157	AR4	D	1188	1193	Right-handed alpha
Helix 158	AR5	D	1210	1226	Right-handed alpha

There are 18 sheets in PDB entry 6R2D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	419	first strand
Strand 2	A	430	431	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	450	first strand
Strand 2	A	706	710	anti-parallel
Strand 3	A	735	740	parallel
Strand 4	A	672	677	parallel
Strand 5	A	637	644	parallel
Strand 6	A	532	536	parallel
Strand 7	A	594	599	parallel
Strand 8	A	582	587	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	942	947	first strand
Strand 2	A	895	900	parallel
Strand 3	A	970	974	parallel
Strand 4	A	1006	1010	parallel
Strand 5	A	1064	1068	parallel
Strand 6	A	1038	1040	parallel
Strand 7	A	1142	1144	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	915	916	first strand
Strand 2	A	923	924	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1093	1094	first strand
Strand 2	A	1135	1140	anti-parallel
Strand 3	A	1111	1115	parallel
Strand 4	A	1163	1171	parallel
Strand 5	A	1196	1200	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	419	first strand
Strand 2	B	430	431	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	450	first strand
Strand 2	B	706	710	anti-parallel
Strand 3	B	735	740	parallel
Strand 4	B	672	677	parallel
Strand 5	B	637	644	parallel
Strand 6	B	532	536	parallel
Strand 7	B	594	599	parallel
Strand 8	B	582	587	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	942	947	first strand
Strand 2	B	895	900	parallel
Strand 3	B	970	974	parallel
Strand 4	B	1006	1010	parallel
Strand 5	B	1064	1068	parallel
Strand 6	B	1038	1040	parallel
Strand 7	B	1142	1144	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	915	916	first strand
Strand 2	B	923	924	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1093	1094	first strand
Strand 2	B	1135	1140	anti-parallel
Strand 3	B	1111	1115	parallel
Strand 4	B	1163	1171	parallel
Strand 5	B	1196	1200	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	450	first strand
Strand 2	C	706	710	anti-parallel
Strand 3	C	735	740	parallel
Strand 4	C	672	677	parallel
Strand 5	C	637	644	parallel
Strand 6	C	532	536	parallel
Strand 7	C	594	599	parallel
Strand 8	C	582	587	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	942	947	first strand
Strand 2	C	895	900	parallel
Strand 3	C	970	974	parallel
Strand 4	C	1006	1010	parallel
Strand 5	C	1064	1068	parallel
Strand 6	C	1038	1040	parallel
Strand 7	C	1142	1144	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	915	916	first strand
Strand 2	C	923	924	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1093	1094	first strand
Strand 2	C	1135	1140	anti-parallel
Strand 3	C	1111	1115	parallel
Strand 4	C	1163	1171	parallel
Strand 5	C	1196	1200	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	447	450	first strand
Strand 2	D	706	710	anti-parallel
Strand 3	D	735	740	parallel
Strand 4	D	672	677	parallel
Strand 5	D	637	644	parallel
Strand 6	D	532	536	parallel
Strand 7	D	594	599	parallel
Strand 8	D	582	587	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	942	947	first strand
Strand 2	D	895	900	parallel
Strand 3	D	970	974	parallel
Strand 4	D	1006	1010	parallel
Strand 5	D	1064	1068	parallel
Strand 6	D	1038	1040	parallel
Strand 7	D	1142	1144	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	915	916	first strand
Strand 2	D	923	924	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1093	1094	first strand
Strand 2	D	1135	1140	anti-parallel
Strand 3	D	1111	1115	parallel
Strand 4	D	1163	1171	parallel
Strand 5	D	1196	1200	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6R2D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6R2D