Analysis of interatomic Contacts of Structural Units in PDB entry:
6R41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6R41 entry

There is 1 chain in PDB entry 6R41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 25LEU 936
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6R41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 58Right-handed alpha
Helix 2
AA2
A
138 146Right-handed alpha
Helix 3
AA3
A
159 164Right-handed alpha
Helix 4
AA4
A
170 176Right-handed alpha
Helix 5
AA5
A
183 188Right-handed alpha
Helix 6
AA6
A
189 192Right-handed 310
Helix 7
AA7
A
236 243Right-handed alpha
Helix 8
AA8
A
243 252Right-handed alpha
Helix 9
AA9
A
271 278Right-handed alpha
Helix 10
AB1
A
289 299Right-handed alpha
Helix 11
AB2
A
349 361Right-handed alpha
Helix 12
AB3
A
438 444Right-handed alpha
Helix 13
AB4
A
489 494Right-handed 310
Helix 14
AB5
A
513 522Right-handed alpha
Helix 15
AB6
A
548 561Right-handed alpha
Helix 16
AB7
A
581 583Right-handed 310
Helix 17
AB8
A
687 692Right-handed alpha
Helix 18
AB9
A
694 696Right-handed 310
Helix 19
AC1
A
717 719Right-handed 310
Helix 20
AC2
A
750 754Right-handed 310
Helix 21
AC3
A
812 821Right-handed alpha
Helix 22
AC4
A
847 852Right-handed alpha
Helix 23
AC5
A
853 857Right-handed 310
Helix 24
AC6
A
858 864Right-handed alpha
Helix 25
AC7
A
865 871Right-handed alpha
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There are 18 sheets in PDB entry 6R41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
52 53anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 72first strand
Strand 2
A
75 82anti-parallel
Strand 3
A
109 116anti-parallel
Strand 4
A
124 132anti-parallel
Strand 5
A
334 335parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
97 99anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
423 425anti-parallel
Strand 3
A
404 408anti-parallel
Strand 4
A
498 502anti-parallel
Strand 5
A
149 151parallel
Strand 6
A
213 214anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
268 270anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
286 287anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 304first strand
Strand 2
A
308 312anti-parallel
Strand 3
A
321 326anti-parallel
Strand 4
A
337 339anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
568 570parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 391first strand
Strand 2
A
394 401anti-parallel
Strand 3
A
541 547anti-parallel
Strand 4
A
573 577anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 586first strand
Strand 2
A
611 612anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 633first strand
Strand 2
A
646 652anti-parallel
Strand 3
A
655 662anti-parallel
Strand 4
A
667 668anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 633first strand
Strand 2
A
646 652anti-parallel
Strand 3
A
655 662anti-parallel
Strand 4
A
681 685anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
698 704first strand
Strand 2
A
709 715anti-parallel
Strand 3
A
735 743anti-parallel
Strand 4
A
761 771anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
775 780first strand
Strand 2
A
786 792anti-parallel
Strand 3
A
797 805anti-parallel
Strand 4
A
808 811anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
840 843first strand
Strand 2
A
873 876anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
884 892first strand
Strand 2
A
895 903anti-parallel
Strand 3
A
909 910anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
884 892first strand
Strand 2
A
895 903anti-parallel
Strand 3
A
928 931anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
915 916first strand
Strand 2
A
919 920anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il