Analysis of interatomic Contacts of Structural Units in PDB entry:
6R48


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6R48 entry

There are 2 chains in PDB entry 6R48 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 318
B
 MET 1VAL 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6R48. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
35 46Right-handed alpha
Helix 3
AA3
A
49 51Right-handed 310
Helix 4
AA4
A
62 76Right-handed alpha
Helix 5
AA5
A
105 112Right-handed alpha
Helix 6
AA6
A
112 129Right-handed alpha
Helix 7
AA7
A
164 169Right-handed alpha
Helix 8
AA8
A
184 212Right-handed alpha
Helix 9
AA9
A
226 240Right-handed alpha
Helix 10
AB1
A
253 267Right-handed alpha
Helix 11
AB2
A
268 271Right-handed 310
Helix 12
AB3
A
300 315Right-handed alpha
Helix 13
AB4
B
12 25Right-handed alpha
Helix 14
AB5
B
35 46Right-handed alpha
Helix 15
AB6
B
49 51Right-handed 310
Helix 16
AB7
B
62 76Right-handed alpha
Helix 17
AB8
B
105 112Right-handed alpha
Helix 18
AB9
B
112 129Right-handed alpha
Helix 19
AC1
B
145 150Right-handed 310
Helix 20
AC2
B
164 169Right-handed alpha
Helix 21
AC3
B
184 212Right-handed alpha
Helix 22
AC4
B
229 240Right-handed alpha
Helix 23
AC5
B
244 248Right-handed 310
Helix 24
AC6
B
253 267Right-handed alpha
Helix 25
AC7
B
268 271Right-handed 310
Helix 26
AC8
B
299 315Right-handed alpha
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There are 2 sheets in PDB entry 6R48. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
28 33parallel
Strand 3
A
4 8parallel
Strand 4
A
80 85parallel
Strand 5
A
135 139parallel
Strand 6
A
214 219parallel
Strand 7
A
275 278parallel
Strand 8
A
286 289anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
28 33parallel
Strand 3
B
4 8parallel
Strand 4
B
80 85parallel
Strand 5
B
135 139parallel
Strand 6
B
214 219parallel
Strand 7
B
275 278parallel
Strand 8
B
286 289anti-parallel
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