Analysis of interatomic Contacts of Structural Units in PDB entry:
6R4P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6R4P entry

There are 2 chains in PDB entry 6R4P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 320PRO 1275
B
 LYS 28GLN 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6R4P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
320 336Right-handed alpha
Helix 2
AA2
A
339 348Right-handed alpha
Helix 3
AA3
A
351 359Right-handed alpha
Helix 4
AA4
A
402 407Right-handed alpha
Helix 5
AA5
A
413 434Right-handed alpha
Helix 6
AA6
A
457 481Right-handed alpha
Helix 7
AA7
A
511 523Right-handed alpha
Helix 8
AA8
A
532 537Right-handed alpha
Helix 9
AA9
A
1021 1037Right-handed alpha
Helix 10
AB1
A
1038 1047Right-handed alpha
Helix 11
AB2
A
1067 1072Right-handed 310
Helix 12
AB3
A
1079 1096Right-handed alpha
Helix 13
AB4
A
1097 1099Right-handed 310
Helix 14
AB5
A
1133 1154Right-handed alpha
Helix 15
AB6
A
1189 1201Right-handed alpha
Helix 16
AB7
A
1210 1218Right-handed alpha
Helix 17
AB8
A
1219 1221Right-handed 310
Helix 18
AB9
B
29 40Right-handed alpha
Helix 19
AC1
B
52 65Right-handed alpha
Helix 20
AC2
B
89 113Right-handed alpha
Helix 21
AC3
B
121 123Right-handed 310
Helix 22
AC4
B
124 134Right-handed alpha
Helix 23
AC5
B
143 156Right-handed alpha
Helix 24
AC6
B
156 165Right-handed alpha
Helix 25
AC7
B
174 185Right-handed alpha
Helix 26
AC8
B
193 200Right-handed alpha
Helix 27
AC9
B
227 238Right-handed 310
Helix 28
AD1
B
264 278Right-handed alpha
Helix 29
AD2
B
293 304Right-handed alpha
Helix 30
AD3
B
307 311Right-handed 310
Helix 31
AD4
B
312 316Right-handed 310
Helix 32
AD5
B
331 352Right-handed alpha
Helix 33
AD6
B
368 389Right-handed alpha
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There are 5 sheets in PDB entry 6R4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 441first strand
Strand 2
A
444 448anti-parallel
Strand 3
A
387 401anti-parallel
Strand 4
A
485 498anti-parallel
Strand 5
A
508 510anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 441first strand
Strand 2
A
444 448anti-parallel
Strand 3
A
387 401anti-parallel
Strand 4
A
485 498anti-parallel
Strand 5
A
529 531parallel
Strand 6
A
569 571anti-parallel
Strand 7
A
545 547anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1052 1055first strand
Strand 2
A
1173 1177anti-parallel
Strand 3
A
1185 1188anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1105 1111first strand
Strand 2
A
1114 1119anti-parallel
Strand 3
A
1060 1065anti-parallel
Strand 4
A
1164 1169anti-parallel
Strand 5
A
1207 1209parallel
Strand 6
A
1236 1242anti-parallel
Strand 7
A
1225 1232anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 214first strand
Strand 2
B
217 223anti-parallel
Strand 3
B
41 46parallel
Strand 4
B
243 249parallel
Strand 5
B
287 292parallel
Strand 6
B
359 363parallel
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