Analysis of interatomic Contacts of Structural Units in PDB entry:
6R5F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6R5F entry

There are 4 chains in PDB entry 6R5F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 9	GLU 294
B	ILE 10	GLU 294
C	VAL 9	GLU 294
D	LYS 11	GLU 294

There are 49 helices in PDB entry 6R5F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	69	Right-handed alpha
Helix 2	AA2	A	99	105	Right-handed alpha
Helix 3	AA3	A	111	132	Right-handed alpha
Helix 4	AA4	A	140	142	Right-handed 310
Helix 5	AA5	A	162	170	Right-handed alpha
Helix 6	AA6	A	189	193	Right-handed 310
Helix 7	AA7	A	194	198	Right-handed 310
Helix 8	AA8	A	206	224	Right-handed alpha
Helix 9	AA9	A	227	231	Right-handed 310
Helix 10	AB1	A	234	244	Right-handed alpha
Helix 11	AB2	A	248	252	Right-handed 310
Helix 12	AB3	A	257	268	Right-handed alpha
Helix 13	AB4	A	271	275	Right-handed 310
Helix 14	AB5	A	277	293	Right-handed alpha
Helix 15	AB6	B	13	17	Right-handed 310
Helix 16	AB7	B	53	68	Right-handed alpha
Helix 17	AB8	B	100	105	Right-handed alpha
Helix 18	AB9	B	111	132	Right-handed alpha
Helix 19	AC1	B	140	142	Right-handed 310
Helix 20	AC2	B	162	170	Right-handed alpha
Helix 21	AC3	B	189	193	Right-handed 310
Helix 22	AC4	B	194	198	Right-handed 310
Helix 23	AC5	B	206	224	Right-handed alpha
Helix 24	AC6	B	233	244	Right-handed alpha
Helix 25	AC7	B	248	252	Right-handed 310
Helix 26	AC8	B	257	268	Right-handed alpha
Helix 27	AC9	B	271	275	Right-handed 310
Helix 28	AD1	B	277	292	Right-handed alpha
Helix 29	AD2	C	13	17	Right-handed 310
Helix 30	AD3	C	58	69	Right-handed alpha
Helix 31	AD4	C	99	105	Right-handed alpha
Helix 32	AD5	C	111	132	Right-handed alpha
Helix 33	AD6	C	162	171	Right-handed alpha
Helix 34	AD7	C	194	198	Right-handed 310
Helix 35	AD8	C	206	224	Right-handed alpha
Helix 36	AD9	C	233	244	Right-handed alpha
Helix 37	AE1	C	248	252	Right-handed 310
Helix 38	AE2	C	257	268	Right-handed alpha
Helix 39	AE3	C	271	275	Right-handed 310
Helix 40	AE4	C	277	293	Right-handed alpha
Helix 41	AE5	D	54	68	Right-handed alpha
Helix 42	AE6	D	100	105	Right-handed alpha
Helix 43	AE7	D	111	132	Right-handed alpha
Helix 44	AE8	D	162	170	Right-handed alpha
Helix 45	AE9	D	194	198	Right-handed 310
Helix 46	AF1	D	207	224	Right-handed alpha
Helix 47	AF2	D	234	244	Right-handed alpha
Helix 48	AF3	D	257	268	Right-handed alpha
Helix 49	AF4	D	277	293	Right-handed alpha

There are 8 sheets in PDB entry 6R5F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	78	84	parallel
Strand 3	A	87	93	anti-parallel
Strand 4	A	40	45	anti-parallel
Strand 5	A	33	36	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	152	154	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	78	84	parallel
Strand 3	B	87	93	anti-parallel
Strand 4	B	40	48	anti-parallel
Strand 5	B	32	36	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	144	146	anti-parallel
Strand 3	B	152	154	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	78	83	parallel
Strand 3	C	87	93	anti-parallel
Strand 4	C	41	48	anti-parallel
Strand 5	C	31	35	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	146	first strand
Strand 2	C	152	154	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	D	32	36	anti-parallel
Strand 3	D	41	46	anti-parallel
Strand 4	D	87	92	anti-parallel
Strand 5	D	78	84	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	144	146	anti-parallel
Strand 3	D	152	154	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6R5F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6R5F