Analysis of interatomic Contacts of Structural Units in PDB entry:
6R5K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6R5K entry

There are 7 chains in PDB entry 6R5K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 31	GLU 1111
D	ALA 38	ALA 427
E	A 1	A 67
F	GLU 34	VAL 198
H	ASN 35	ALA 428
N	MET 225	ALA 680
O	PRO 224	HIS 683

There are 83 helices in PDB entry 6R5K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	418	422	Right-handed 310
Helix 2	AA2	A	432	437	Right-handed alpha
Helix 3	AA3	A	448	456	Right-handed alpha
Helix 4	AA4	A	476	480	Right-handed 310
Helix 5	AA5	A	515	524	Right-handed alpha
Helix 6	AA6	A	526	537	Right-handed alpha
Helix 7	AA7	A	544	561	Right-handed alpha
Helix 8	AA8	A	567	580	Right-handed alpha
Helix 9	AA9	A	594	600	Right-handed alpha
Helix 10	AB1	A	617	636	Right-handed alpha
Helix 11	AB2	A	642	649	Right-handed alpha
Helix 12	AB3	A	695	704	Right-handed alpha
Helix 13	AB4	A	742	752	Right-handed alpha
Helix 14	AB5	A	833	839	Right-handed alpha
Helix 15	AB6	A	854	859	Right-handed alpha
Helix 16	AB7	A	896	900	Right-handed 310
Helix 17	AB8	A	997	1009	Right-handed alpha
Helix 18	AB9	A	1016	1025	Right-handed alpha
Helix 19	AC1	A	1029	1034	Right-handed alpha
Helix 20	AC2	A	1035	1040	Right-handed alpha
Helix 21	AC3	A	1048	1057	Right-handed alpha
Helix 22	AC4	A	1067	1088	Right-handed alpha
Helix 23	AC5	A	1090	1105	Right-handed alpha
Helix 24	AC6	D	50	59	Right-handed alpha
Helix 25	AC7	D	88	98	Right-handed alpha
Helix 26	AC8	D	119	124	Right-handed alpha
Helix 27	AC9	D	138	147	Right-handed alpha
Helix 28	AD1	D	176	185	Right-handed alpha
Helix 29	AD2	D	231	239	Right-handed alpha
Helix 30	AD3	D	268	278	Right-handed alpha
Helix 31	AD4	D	302	320	Right-handed alpha
Helix 32	AD5	D	334	342	Right-handed alpha
Helix 33	AD6	D	343	346	Right-handed 310
Helix 34	AD7	D	371	382	Right-handed alpha
Helix 35	AD8	D	401	426	Right-handed alpha
Helix 36	AD9	F	51	58	Right-handed alpha
Helix 37	AE1	F	59	62	Right-handed 310
Helix 38	AE2	F	88	99	Right-handed alpha
Helix 39	AE3	F	139	146	Right-handed alpha
Helix 40	AE4	F	177	187	Right-handed alpha
Helix 41	AE5	H	50	59	Right-handed alpha
Helix 42	AE6	H	88	99	Right-handed alpha
Helix 43	AE7	H	116	122	Right-handed alpha
Helix 44	AE8	H	138	146	Right-handed alpha
Helix 45	AE9	H	175	186	Right-handed alpha
Helix 46	AF1	H	208	213	Right-handed alpha
Helix 47	AF2	H	233	238	Right-handed alpha
Helix 48	AF3	H	239	243	Right-handed 310
Helix 49	AF4	H	268	277	Right-handed alpha
Helix 50	AF5	H	304	312	Right-handed alpha
Helix 51	AF6	H	334	343	Right-handed alpha
Helix 52	AF7	H	344	346	Right-handed 310
Helix 53	AF8	H	371	381	Right-handed alpha
Helix 54	AF9	H	401	427	Right-handed alpha
Helix 55	AG1	N	261	275	Right-handed alpha
Helix 56	AG2	N	335	348	Right-handed alpha
Helix 57	AG3	N	383	389	Right-handed alpha
Helix 58	AG4	N	398	419	Right-handed alpha
Helix 59	AG5	N	449	453	Right-handed 310
Helix 60	AG6	N	467	493	Right-handed alpha
Helix 61	AG7	N	508	514	Right-handed alpha
Helix 62	AG8	N	519	531	Right-handed alpha
Helix 63	AG9	N	539	548	Right-handed alpha
Helix 64	AH1	N	549	570	Right-handed alpha
Helix 65	AH2	N	575	588	Right-handed alpha
Helix 66	AH3	N	597	601	Right-handed 310
Helix 67	AH4	N	607	618	Right-handed alpha
Helix 68	AH5	N	629	643	Right-handed alpha
Helix 69	AH6	N	663	679	Right-handed alpha
Helix 70	AH7	O	240	245	Right-handed alpha
Helix 71	AH8	O	252	257	Right-handed alpha
Helix 72	AH9	O	259	274	Right-handed alpha
Helix 73	AI1	O	335	348	Right-handed alpha
Helix 74	AI2	O	384	389	Right-handed alpha
Helix 75	AI3	O	398	420	Right-handed alpha
Helix 76	AI4	O	468	493	Right-handed alpha
Helix 77	AI5	O	508	515	Right-handed alpha
Helix 78	AI6	O	519	529	Right-handed alpha
Helix 79	AI7	O	548	589	Right-handed alpha
Helix 80	AI8	O	605	611	Right-handed alpha
Helix 81	AI9	O	612	618	Right-handed alpha
Helix 82	AJ1	O	629	643	Right-handed alpha
Helix 83	AJ2	O	663	678	Right-handed alpha

There are 28 sheets in PDB entry 6R5K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	44	47	anti-parallel
Strand 3	A	53	56	anti-parallel
Strand 4	A	62	66	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	84	88	anti-parallel
Strand 3	A	93	97	anti-parallel
Strand 4	A	102	106	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	145	first strand
Strand 2	A	152	155	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	172	176	anti-parallel
Strand 3	A	181	184	anti-parallel
Strand 4	A	191	195	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	208	first strand
Strand 2	A	211	215	anti-parallel
Strand 3	A	229	234	anti-parallel
Strand 4	A	240	245	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	270	273	anti-parallel
Strand 3	A	279	282	anti-parallel
Strand 4	A	290	293	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	304	first strand
Strand 2	A	313	315	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	664	670	first strand
Strand 2	A	650	657	anti-parallel
Strand 3	A	722	728	anti-parallel
Strand 4	A	705	709	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	674	675	first strand
Strand 2	A	735	739	parallel
Strand 3	A	845	852	anti-parallel
Strand 4	A	787	797	anti-parallel
Strand 5	A	759	765	anti-parallel
Strand 6	A	768	772	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	674	675	first strand
Strand 2	A	735	739	parallel
Strand 3	A	845	852	anti-parallel
Strand 4	A	787	797	anti-parallel
Strand 5	A	803	813	anti-parallel
Strand 6	A	818	824	anti-parallel
Strand 7	A	829	832	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	990	992	first strand
Strand 2	A	956	962	parallel
Strand 3	A	937	945	anti-parallel
Strand 4	A	905	915	anti-parallel
Strand 5	A	1010	1013	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	78	85	anti-parallel
Strand 3	D	41	43	anti-parallel
Strand 4	D	110	111	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	104	first strand
Strand 2	D	107	108	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	130	first strand
Strand 2	D	169	170	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	224	first strand
Strand 2	D	290	292	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	249	first strand
Strand 2	D	263	265	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	368	first strand
Strand 2	D	323	327	anti-parallel
Strand 3	D	393	395	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	68	first strand
Strand 2	F	83	85	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	130	first strand
Strand 2	F	165	172	anti-parallel
Strand 3	F	154	159	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	68	first strand
Strand 2	H	81	86	anti-parallel
Strand 3	H	38	43	anti-parallel
Strand 4	H	110	112	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	72	first strand
Strand 2	H	77	78	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	103	104	first strand
Strand 2	H	107	108	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	155	first strand
Strand 2	H	171	172	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	248	249	first strand
Strand 2	H	262	264	anti-parallel
Strand 3	H	220	224	anti-parallel
Strand 4	H	290	294	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	350	353	first strand
Strand 2	H	364	368	anti-parallel
Strand 3	H	323	327	anti-parallel
Strand 4	H	393	395	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	291	296	first strand
Strand 2	N	311	315	anti-parallel
Strand 3	N	322	325	anti-parallel
Strand 4	N	369	376	anti-parallel
Strand 5	N	359	364	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	291	296	first strand
Strand 2	O	310	315	anti-parallel
Strand 3	O	321	327	anti-parallel
Strand 4	O	370	376	anti-parallel
Strand 5	O	358	363	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	647	651	first strand
Strand 2	O	658	662	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6R5K

Analysis of interatomic Contacts of Structural Units in PDB entry:
6R5K