Analysis of interatomic Contacts of Structural Units in PDB entry:
6R5W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6R5W entry

There are 3 chains in PDB entry 6R5W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 203	THR 373
B	ALA 203	GLU 370
C	ALA 203	VAL 371

There are 15 helices in PDB entry 6R5W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	207	216	Right-handed alpha
Helix 2	AA2	A	217	221	Right-handed 310
Helix 3	AA3	A	223	232	Right-handed alpha
Helix 4	AA4	A	235	258	Right-handed alpha
Helix 5	AA5	A	311	315	Right-handed 310
Helix 6	AA6	B	207	216	Right-handed alpha
Helix 7	AA7	B	217	221	Right-handed 310
Helix 8	AA8	B	223	232	Right-handed alpha
Helix 9	AA9	B	235	258	Right-handed alpha
Helix 10	AB1	B	311	315	Right-handed 310
Helix 11	AB2	C	207	216	Right-handed alpha
Helix 12	AB3	C	217	221	Right-handed 310
Helix 13	AB4	C	223	232	Right-handed alpha
Helix 14	AB5	C	235	258	Right-handed alpha
Helix 15	AB6	C	311	315	Right-handed 310

There are 9 sheets in PDB entry 6R5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	265	first strand
Strand 2	A	272	284	anti-parallel
Strand 3	A	287	297	anti-parallel
Strand 4	A	359	360	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	265	first strand
Strand 2	A	272	284	anti-parallel
Strand 3	A	287	297	anti-parallel
Strand 4	A	365	367	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	309	first strand
Strand 2	A	346	352	anti-parallel
Strand 3	A	336	341	anti-parallel
Strand 4	A	322	327	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	264	first strand
Strand 2	B	272	284	anti-parallel
Strand 3	B	287	297	anti-parallel
Strand 4	B	359	360	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	264	first strand
Strand 2	B	272	284	anti-parallel
Strand 3	B	287	297	anti-parallel
Strand 4	B	365	367	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	306	first strand
Strand 2	B	347	352	anti-parallel
Strand 3	B	336	341	anti-parallel
Strand 4	B	322	327	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	264	first strand
Strand 2	C	272	284	anti-parallel
Strand 3	C	287	297	anti-parallel
Strand 4	C	359	360	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	264	first strand
Strand 2	C	272	284	anti-parallel
Strand 3	C	287	297	anti-parallel
Strand 4	C	365	367	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	309	first strand
Strand 2	C	346	352	anti-parallel
Strand 3	C	336	341	anti-parallel
Strand 4	C	322	327	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6R5W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6R5W