Analysis of interatomic Contacts of Structural Units in PDB entry:
6R60

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6R60 entry

There are 4 chains in PDB entry 6R60 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 7	THR 205
B	ARG 32	HIS 207
C	TRP 7	THR 205
D	ARG 32	THR 205

There are 2 helices in PDB entry 6R60. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	34	42	Right-handed alpha
Helix 2	AA2	D	34	42	Right-handed alpha

There are 18 sheets in PDB entry 6R60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	18	21	anti-parallel
Strand 3	A	27	30	anti-parallel
Strand 4	A	36	40	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	58	63	anti-parallel
Strand 3	A	68	72	anti-parallel
Strand 4	A	77	81	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	99	104	anti-parallel
Strand 3	A	108	113	anti-parallel
Strand 4	A	118	123	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	134	first strand
Strand 2	A	140	145	anti-parallel
Strand 3	A	149	154	anti-parallel
Strand 4	A	159	164	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	181	186	anti-parallel
Strand 3	A	190	195	anti-parallel
Strand 4	A	200	204	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	58	62	anti-parallel
Strand 3	B	68	72	anti-parallel
Strand 4	B	77	81	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	93	first strand
Strand 2	B	99	104	anti-parallel
Strand 3	B	108	113	anti-parallel
Strand 4	B	118	123	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	134	first strand
Strand 2	B	140	145	anti-parallel
Strand 3	B	149	154	anti-parallel
Strand 4	B	159	164	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	181	186	anti-parallel
Strand 3	B	190	195	anti-parallel
Strand 4	B	200	205	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	18	21	anti-parallel
Strand 3	C	27	30	anti-parallel
Strand 4	C	36	40	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	52	first strand
Strand 2	C	58	63	anti-parallel
Strand 3	C	68	72	anti-parallel
Strand 4	C	77	81	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	99	104	anti-parallel
Strand 3	C	108	113	anti-parallel
Strand 4	C	118	123	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	134	first strand
Strand 2	C	140	145	anti-parallel
Strand 3	C	149	154	anti-parallel
Strand 4	C	159	164	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	175	first strand
Strand 2	C	181	186	anti-parallel
Strand 3	C	190	195	anti-parallel
Strand 4	C	200	204	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	58	62	anti-parallel
Strand 3	D	68	72	anti-parallel
Strand 4	D	77	81	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	93	first strand
Strand 2	D	99	104	anti-parallel
Strand 3	D	108	113	anti-parallel
Strand 4	D	118	123	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	134	first strand
Strand 2	D	140	145	anti-parallel
Strand 3	D	149	154	anti-parallel
Strand 4	D	159	164	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	175	first strand
Strand 2	D	181	186	anti-parallel
Strand 3	D	190	195	anti-parallel
Strand 4	D	200	204	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6R60

Analysis of interatomic Contacts of Structural Units in PDB entry:
6R60