Analysis of interatomic Contacts of Structural Units in PDB entry:
6R7Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6R7Y entry

There are 2 chains in PDB entry 6R7Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 14MET 640
B
 SER 14MET 640
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6R7Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 41Right-handed alpha
Helix 2
AA2
A
63 67Right-handed 310
Helix 3
AA3
A
75 87Right-handed alpha
Helix 4
AA4
A
104 108Right-handed 310
Helix 5
AA5
A
120 134Right-handed alpha
Helix 6
AA6
A
156 164Right-handed alpha
Helix 7
AA7
A
179 184Right-handed alpha
Helix 8
AA8
A
196 205Right-handed alpha
Helix 9
AA9
A
206 220Right-handed alpha
Helix 10
AB1
A
222 230Right-handed alpha
Helix 11
AB2
A
230 235Right-handed alpha
Helix 12
AB3
A
236 240Right-handed 310
Helix 13
AB4
A
243 273Right-handed alpha
Helix 14
AB5
A
306 316Right-handed alpha
Helix 15
AB6
A
317 350Right-handed alpha
Helix 16
AB7
A
352 355Right-handed 310
Helix 17
AB8
A
356 387Right-handed alpha
Helix 18
AB9
A
392 422Right-handed alpha
Helix 19
AC1
A
425 449Right-handed alpha
Helix 20
AC2
A
449 469Right-handed alpha
Helix 21
AC3
A
475 487Right-handed alpha
Helix 22
AC4
A
495 510Right-handed alpha
Helix 23
AC5
A
517 539Right-handed alpha
Helix 24
AC6
A
554 575Right-handed alpha
Helix 25
AC7
A
589 613Right-handed alpha
Helix 26
AC8
A
617 640Right-handed alpha
Helix 27
AC9
B
28 41Right-handed alpha
Helix 28
AD1
B
63 67Right-handed 310
Helix 29
AD2
B
75 87Right-handed alpha
Helix 30
AD3
B
104 108Right-handed 310
Helix 31
AD4
B
120 134Right-handed alpha
Helix 32
AD5
B
156 164Right-handed alpha
Helix 33
AD6
B
179 184Right-handed alpha
Helix 34
AD7
B
196 205Right-handed alpha
Helix 35
AD8
B
206 220Right-handed alpha
Helix 36
AD9
B
222 230Right-handed alpha
Helix 37
AE1
B
230 235Right-handed alpha
Helix 38
AE2
B
236 240Right-handed 310
Helix 39
AE3
B
243 273Right-handed alpha
Helix 40
AE4
B
306 316Right-handed alpha
Helix 41
AE5
B
317 350Right-handed alpha
Helix 42
AE6
B
352 355Right-handed 310
Helix 43
AE7
B
356 387Right-handed alpha
Helix 44
AE8
B
392 422Right-handed alpha
Helix 45
AE9
B
425 449Right-handed alpha
Helix 46
AF1
B
449 469Right-handed alpha
Helix 47
AF2
B
475 487Right-handed alpha
Helix 48
AF3
B
495 510Right-handed alpha
Helix 49
AF4
B
517 539Right-handed alpha
Helix 50
AF5
B
554 575Right-handed alpha
Helix 51
AF6
B
589 613Right-handed alpha
Helix 52
AF7
B
617 640Right-handed alpha
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There are 6 sheets in PDB entry 6R7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
69 73anti-parallel
Strand 3
A
19 23anti-parallel
Strand 4
A
167 172anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
97 99anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
301 304anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
69 73anti-parallel
Strand 3
B
19 23anti-parallel
Strand 4
B
167 172anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
97 99anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 294first strand
Strand 2
B
301 304anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il