Analysis of interatomic Contacts of Structural Units in PDB entry:
6R85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6R85 entry

There are 2 chains in PDB entry 6R85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3CYS 243
B
 LYS 2CYS 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 6R85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 41Right-handed alpha
Helix 2
AA2
A
62 72Right-handed alpha
Helix 3
AA3
A
85 90Right-handed alpha
Helix 4
AA4
A
115 122Right-handed alpha
Helix 5
AA5
A
133 143Right-handed alpha
Helix 6
AA6
A
145 147Right-handed 310
Helix 7
AA7
A
154 165Right-handed alpha
Helix 8
AA8
A
166 169Right-handed 310
Helix 9
AA9
A
178 187Right-handed alpha
Helix 10
AB1
A
211 227Right-handed alpha
Helix 11
AB2
A
228 238Right-handed alpha
Helix 12
AB3
B
30 41Right-handed alpha
Helix 13
AB4
B
62 72Right-handed alpha
Helix 14
AB5
B
85 90Right-handed alpha
Helix 15
AB6
B
115 122Right-handed alpha
Helix 16
AB7
B
133 141Right-handed alpha
Helix 17
AB8
B
145 147Right-handed 310
Helix 18
AB9
B
154 165Right-handed alpha
Helix 19
AC1
B
166 169Right-handed 310
Helix 20
AC2
B
178 188Right-handed alpha
Helix 21
AC3
B
211 227Right-handed alpha
Helix 22
AC4
B
228 239Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6R85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 54first strand
Strand 2
A
4 9parallel
Strand 3
A
77 83parallel
Strand 4
A
203 207anti-parallel
Strand 5
A
93 94anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
28 29anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
126 129parallel
Strand 3
A
173 177parallel
Strand 4
A
103 108anti-parallel
Strand 5
A
191 194anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 54first strand
Strand 2
B
4 9parallel
Strand 3
B
77 78parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
28 29anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
206 207anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 152first strand
Strand 2
B
126 129parallel
Strand 3
B
173 177parallel
Strand 4
B
103 108anti-parallel
Strand 5
B
191 194anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il