Analysis of interatomic Contacts of Structural Units in PDB entry:
6R8B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6R8B entry

There are 4 chains in PDB entry 6R8B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	LEU 10	ARG 431
B	LEU 10	ARG 431
A	LEU 10	ARG 431
C	LEU 10	ARG 431

There are 60 helices in PDB entry 6R8B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	16	18	Right-handed 310
Helix 2	AA2	D	41	44	Right-handed 310
Helix 3	AA3	D	53	64	Right-handed alpha
Helix 4	AA4	D	78	88	Right-handed alpha
Helix 5	AA5	D	92	96	Right-handed 310
Helix 6	AA6	D	116	121	Right-handed 310
Helix 7	AA7	D	124	130	Right-handed alpha
Helix 8	AA8	D	148	160	Right-handed alpha
Helix 9	AA9	D	174	178	Right-handed 310
Helix 10	AB1	D	220	233	Right-handed alpha
Helix 11	AB2	D	243	252	Right-handed alpha
Helix 12	AB3	D	260	262	Right-handed 310
Helix 13	AB4	D	279	289	Right-handed alpha
Helix 14	AB5	D	399	407	Right-handed alpha
Helix 15	AB6	D	418	425	Right-handed alpha
Helix 16	AB7	B	16	18	Right-handed 310
Helix 17	AB8	B	41	44	Right-handed 310
Helix 18	AB9	B	53	64	Right-handed alpha
Helix 19	AC1	B	78	88	Right-handed alpha
Helix 20	AC2	B	92	96	Right-handed 310
Helix 21	AC3	B	116	121	Right-handed 310
Helix 22	AC4	B	124	130	Right-handed alpha
Helix 23	AC5	B	148	160	Right-handed alpha
Helix 24	AC6	B	174	178	Right-handed 310
Helix 25	AC7	B	220	233	Right-handed alpha
Helix 26	AC8	B	243	252	Right-handed alpha
Helix 27	AC9	B	260	262	Right-handed 310
Helix 28	AD1	B	279	289	Right-handed alpha
Helix 29	AD2	B	399	407	Right-handed alpha
Helix 30	AD3	B	418	425	Right-handed alpha
Helix 31	AD4	A	16	18	Right-handed 310
Helix 32	AD5	A	41	44	Right-handed 310
Helix 33	AD6	A	53	64	Right-handed alpha
Helix 34	AD7	A	78	88	Right-handed alpha
Helix 35	AD8	A	92	96	Right-handed 310
Helix 36	AD9	A	116	121	Right-handed 310
Helix 37	AE1	A	124	130	Right-handed alpha
Helix 38	AE2	A	148	160	Right-handed alpha
Helix 39	AE3	A	174	178	Right-handed 310
Helix 40	AE4	A	220	233	Right-handed alpha
Helix 41	AE5	A	243	252	Right-handed alpha
Helix 42	AE6	A	260	262	Right-handed 310
Helix 43	AE7	A	279	289	Right-handed alpha
Helix 44	AE8	A	399	407	Right-handed alpha
Helix 45	AE9	A	418	425	Right-handed alpha
Helix 46	AF1	C	16	18	Right-handed 310
Helix 47	AF2	C	41	44	Right-handed 310
Helix 48	AF3	C	53	64	Right-handed alpha
Helix 49	AF4	C	78	88	Right-handed alpha
Helix 50	AF5	C	92	96	Right-handed 310
Helix 51	AF6	C	116	121	Right-handed 310
Helix 52	AF7	C	124	130	Right-handed alpha
Helix 53	AF8	C	148	160	Right-handed alpha
Helix 54	AF9	C	174	178	Right-handed 310
Helix 55	AG1	C	220	233	Right-handed alpha
Helix 56	AG2	C	243	252	Right-handed alpha
Helix 57	AG3	C	260	262	Right-handed 310
Helix 58	AG4	C	279	289	Right-handed alpha
Helix 59	AG5	C	399	407	Right-handed alpha
Helix 60	AG6	C	418	425	Right-handed alpha

There are 20 sheets in PDB entry 6R8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	103	first strand
Strand 2	D	68	73	parallel
Strand 3	D	20	25	parallel
Strand 4	D	135	140	parallel
Strand 5	D	208	219	anti-parallel
Strand 6	D	163	171	anti-parallel
Strand 7	D	254	258	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	51	52	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	274	275	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	183	first strand
Strand 2	D	189	193	anti-parallel

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There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	390	first strand
Strand 2	D	372	373	parallel
Strand 3	D	355	356	parallel
Strand 4	D	339	341	parallel
Strand 5	D	316	319	parallel
Strand 6	C	332	334	anti-parallel
Strand 7	C	349	350	parallel
Strand 8	C	361	367	parallel
Strand 9	C	345	346	parallel
Strand 10	C	327	330	parallel
Strand 11	D	327	330	anti-parallel
Strand 12	D	345	346	parallel
Strand 13	D	361	367	parallel
Strand 14	D	349	350	parallel
Strand 15	D	332	334	parallel
Strand 16	C	316	319	anti-parallel
Strand 17	C	339	341	parallel
Strand 18	C	355	356	parallel
Strand 19	C	372	373	parallel
Strand 20	C	389	390	parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	408	409	first strand
Strand 2	D	415	417	anti-parallel
Strand 3	D	378	384	parallel
Strand 4	D	361	367	parallel
Strand 5	D	345	346	parallel
Strand 6	D	327	330	parallel
Strand 7	C	327	330	anti-parallel
Strand 8	C	345	346	parallel
Strand 9	C	361	367	parallel
Strand 10	C	378	384	parallel
Strand 11	C	415	417	parallel
Strand 12	C	408	409	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	103	first strand
Strand 2	B	68	73	parallel
Strand 3	B	20	25	parallel
Strand 4	B	135	140	parallel
Strand 5	B	208	219	anti-parallel
Strand 6	B	163	171	anti-parallel
Strand 7	B	254	258	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	51	52	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	274	275	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	183	first strand
Strand 2	B	189	193	anti-parallel

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There are 20 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	B	372	373	parallel
Strand 3	B	355	356	parallel
Strand 4	B	339	341	parallel
Strand 5	B	316	319	parallel
Strand 6	A	332	334	anti-parallel
Strand 7	A	349	350	parallel
Strand 8	A	361	367	parallel
Strand 9	A	345	346	parallel
Strand 10	A	327	330	parallel
Strand 11	B	327	330	anti-parallel
Strand 12	B	345	346	parallel
Strand 13	B	361	367	parallel
Strand 14	B	349	350	parallel
Strand 15	B	332	334	parallel
Strand 16	A	316	319	anti-parallel
Strand 17	A	339	341	parallel
Strand 18	A	355	356	parallel
Strand 19	A	372	373	parallel
Strand 20	A	389	390	parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	409	first strand
Strand 2	B	415	417	anti-parallel
Strand 3	B	378	384	parallel
Strand 4	B	361	367	parallel
Strand 5	B	345	346	parallel
Strand 6	B	327	330	parallel
Strand 7	A	327	330	anti-parallel
Strand 8	A	345	346	parallel
Strand 9	A	361	367	parallel
Strand 10	A	378	384	parallel
Strand 11	A	415	417	parallel
Strand 12	A	408	409	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	103	first strand
Strand 2	A	68	73	parallel
Strand 3	A	20	25	parallel
Strand 4	A	135	140	parallel
Strand 5	A	208	219	anti-parallel
Strand 6	A	163	171	anti-parallel
Strand 7	A	254	258	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	51	52	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	274	275	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	183	first strand
Strand 2	A	189	193	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	103	first strand
Strand 2	C	68	73	parallel
Strand 3	C	20	25	parallel
Strand 4	C	135	140	parallel
Strand 5	C	208	219	anti-parallel
Strand 6	C	163	171	anti-parallel
Strand 7	C	254	258	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	51	52	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	274	275	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	183	first strand
Strand 2	C	189	193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6R8B

Analysis of interatomic Contacts of Structural Units in PDB entry:
6R8B