Analysis of interatomic Contacts of Structural Units in PDB entry:
6R8F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6R8F entry

There are 8 chains in PDB entry 6R8F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 8	GLU 311
B	ALA 2	LYS 252
K	GLY 42	PRO 497
C	ALA 8	GLU 311
D	ALA 2	LYS 252
L	GLY 42	PRO 497
E	ALA 6	UNK 255
G	ALA 6	UNK 255

There are 76 helices in PDB entry 6R8F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	27	Right-handed alpha
Helix 2	AA2	A	93	112	Right-handed alpha
Helix 3	AA3	A	132	141	Right-handed alpha
Helix 4	AA4	A	226	231	Right-handed alpha
Helix 5	AA5	A	233	250	Right-handed alpha
Helix 6	AA6	A	259	264	Right-handed alpha
Helix 7	AA7	A	267	272	Right-handed alpha
Helix 8	AA8	A	283	311	Right-handed alpha
Helix 9	AA9	B	8	17	Right-handed alpha
Helix 10	AB1	B	76	81	Right-handed alpha
Helix 11	AB2	B	107	111	Right-handed 310
Helix 12	AB3	B	112	120	Right-handed alpha
Helix 13	AB4	B	182	193	Right-handed alpha
Helix 14	AB5	B	194	196	Right-handed 310
Helix 15	AB6	B	209	252	Right-handed alpha
Helix 16	AB7	K	48	53	Right-handed alpha
Helix 17	AB8	K	53	69	Right-handed alpha
Helix 18	AB9	K	81	85	Right-handed 310
Helix 19	AC1	K	115	125	Right-handed alpha
Helix 20	AC2	K	150	155	Right-handed alpha
Helix 21	AC3	K	207	217	Right-handed alpha
Helix 22	AC4	K	235	244	Right-handed alpha
Helix 23	AC5	K	266	270	Right-handed 310
Helix 24	AC6	K	311	316	Right-handed alpha
Helix 25	AC7	K	317	319	Right-handed 310
Helix 26	AC8	K	329	334	Right-handed alpha
Helix 27	AC9	K	339	344	Right-handed alpha
Helix 28	AD1	K	344	369	Right-handed alpha
Helix 29	AD2	K	393	401	Right-handed alpha
Helix 30	AD3	K	429	434	Right-handed alpha
Helix 31	AD4	K	437	462	Right-handed alpha
Helix 32	AD5	K	464	472	Right-handed alpha
Helix 33	AD6	K	475	493	Right-handed alpha
Helix 34	AD7	C	16	27	Right-handed alpha
Helix 35	AD8	C	93	112	Right-handed alpha
Helix 36	AD9	C	132	141	Right-handed alpha
Helix 37	AE1	C	226	231	Right-handed alpha
Helix 38	AE2	C	233	250	Right-handed alpha
Helix 39	AE3	C	259	264	Right-handed alpha
Helix 40	AE4	C	267	272	Right-handed alpha
Helix 41	AE5	C	283	311	Right-handed alpha
Helix 42	AE6	D	8	17	Right-handed alpha
Helix 43	AE7	D	76	81	Right-handed alpha
Helix 44	AE8	D	107	111	Right-handed 310
Helix 45	AE9	D	112	120	Right-handed alpha
Helix 46	AF1	D	182	193	Right-handed alpha
Helix 47	AF2	D	194	196	Right-handed 310
Helix 48	AF3	D	209	252	Right-handed alpha
Helix 49	AF4	L	48	53	Right-handed alpha
Helix 50	AF5	L	53	69	Right-handed alpha
Helix 51	AF6	L	81	85	Right-handed 310
Helix 52	AF7	L	115	125	Right-handed alpha
Helix 53	AF8	L	150	155	Right-handed alpha
Helix 54	AF9	L	207	217	Right-handed alpha
Helix 55	AG1	L	235	244	Right-handed alpha
Helix 56	AG2	L	266	270	Right-handed 310
Helix 57	AG3	L	311	316	Right-handed alpha
Helix 58	AG4	L	317	319	Right-handed 310
Helix 59	AG5	L	329	334	Right-handed alpha
Helix 60	AG6	L	339	344	Right-handed alpha
Helix 61	AG7	L	344	369	Right-handed alpha
Helix 62	AG8	L	393	401	Right-handed alpha
Helix 63	AG9	L	429	434	Right-handed alpha
Helix 64	AH1	L	437	462	Right-handed alpha
Helix 65	AH2	L	464	472	Right-handed alpha
Helix 66	AH3	L	475	493	Right-handed alpha
Helix 67	AH4	E	11	14	Right-handed 310
Helix 68	AH5	E	15	25	Right-handed alpha
Helix 69	AH6	E	111	130	Right-handed alpha
Helix 70	AH7	E	141	149	Right-handed alpha
Helix 71	AH8	E	242	255	Right-handed alpha
Helix 72	AH9	G	11	14	Right-handed 310
Helix 73	AI1	G	15	25	Right-handed alpha
Helix 74	AI2	G	111	130	Right-handed alpha
Helix 75	AI3	G	141	149	Right-handed alpha
Helix 76	AI4	G	242	255	Right-handed alpha

There are 14 sheets in PDB entry 6R8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	219	first strand
Strand 2	A	11	15	parallel
Strand 3	A	71	79	parallel
Strand 4	A	35	42	anti-parallel
Strand 5	A	116	123	anti-parallel
Strand 6	A	152	158	parallel
Strand 7	A	166	172	anti-parallel
Strand 8	B	140	146	anti-parallel
Strand 9	B	126	131	anti-parallel
Strand 10	B	91	97	parallel
Strand 11	B	24	32	anti-parallel
Strand 12	B	52	58	anti-parallel
Strand 13	B	4	5	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	71	72	first strand
Strand 2	K	405	406	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	134	136	first strand
Strand 2	K	288	293	anti-parallel
Strand 3	K	273	277	anti-parallel
Strand 4	K	247	250	parallel
Strand 5	K	220	222	parallel
Strand 6	K	160	164	parallel
Strand 7	K	191	195	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	296	297	first strand
Strand 2	K	307	308	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	371	372	first strand
Strand 2	K	383	385	anti-parallel
Strand 3	K	423	425	anti-parallel
Strand 4	K	409	410	anti-parallel

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There are 13 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	219	first strand
Strand 2	C	11	15	parallel
Strand 3	C	71	79	parallel
Strand 4	C	35	42	anti-parallel
Strand 5	C	116	123	anti-parallel
Strand 6	C	152	158	parallel
Strand 7	C	166	172	anti-parallel
Strand 8	D	140	146	anti-parallel
Strand 9	D	126	131	anti-parallel
Strand 10	D	91	97	parallel
Strand 11	D	24	32	anti-parallel
Strand 12	D	52	58	anti-parallel
Strand 13	D	4	5	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	71	72	first strand
Strand 2	L	405	406	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	134	136	first strand
Strand 2	L	288	293	anti-parallel
Strand 3	L	273	277	anti-parallel
Strand 4	L	247	250	parallel
Strand 5	L	220	222	parallel
Strand 6	L	160	164	parallel
Strand 7	L	191	195	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	296	297	first strand
Strand 2	L	307	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	371	372	first strand
Strand 2	L	383	385	anti-parallel
Strand 3	L	423	425	anti-parallel
Strand 4	L	409	410	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	38	first strand
Strand 2	E	56	60	anti-parallel
Strand 3	E	67	72	anti-parallel
Strand 4	E	83	86	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	163	first strand
Strand 2	E	175	180	anti-parallel
Strand 3	E	202	203	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	38	first strand
Strand 2	G	56	60	anti-parallel
Strand 3	G	67	72	anti-parallel
Strand 4	G	83	86	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	160	163	first strand
Strand 2	G	175	180	anti-parallel
Strand 3	G	202	203	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6R8F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6R8F