Analysis of interatomic Contacts of Structural Units in PDB entry:
6R8Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6R8Y entry

There are 13 chains in PDB entry 6R8Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 36	ALA 136
B	ARG 18	GLY 103
C	LYS 10	LYS 126
D	ARG 30	LYS 126
E	VAL 36	ALA 136
F	VAL 22	GLY 103
G	LYS 10	LYS 126
H	ARG 30	LYS 126
I	A 1	T 145
J	A 1	A 94
J	G 97	T 145
K	MET 1	HIS 1140
L	VAL 55	LYS 427

There are 48 helices in PDB entry 6R8Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	58	Right-handed alpha
Helix 2	AA2	A	64	80	Right-handed alpha
Helix 3	AA3	A	86	115	Right-handed alpha
Helix 4	AA4	A	121	133	Right-handed alpha
Helix 5	AA5	B	26	30	Right-handed 310
Helix 6	AA6	B	31	42	Right-handed alpha
Helix 7	AA7	B	50	77	Right-handed alpha
Helix 8	AA8	B	83	94	Right-handed alpha
Helix 9	AA9	C	17	23	Right-handed alpha
Helix 10	AB1	C	28	37	Right-handed alpha
Helix 11	AB2	C	46	74	Right-handed alpha
Helix 12	AB3	C	80	91	Right-handed alpha
Helix 13	AB4	C	91	98	Right-handed alpha
Helix 14	AB5	C	113	117	Right-handed 310
Helix 15	AB6	D	38	50	Right-handed alpha
Helix 16	AB7	D	56	85	Right-handed alpha
Helix 17	AB8	D	91	103	Right-handed alpha
Helix 18	AB9	D	104	125	Right-handed alpha
Helix 19	AC1	E	45	58	Right-handed alpha
Helix 20	AC2	E	64	78	Right-handed alpha
Helix 21	AC3	E	86	115	Right-handed alpha
Helix 22	AC4	E	121	133	Right-handed alpha
Helix 23	AC5	F	26	30	Right-handed 310
Helix 24	AC6	F	31	42	Right-handed alpha
Helix 25	AC7	F	50	77	Right-handed alpha
Helix 26	AC8	F	83	94	Right-handed alpha
Helix 27	AC9	G	17	23	Right-handed alpha
Helix 28	AD1	G	28	37	Right-handed alpha
Helix 29	AD2	G	46	74	Right-handed alpha
Helix 30	AD3	G	80	91	Right-handed alpha
Helix 31	AD4	G	91	98	Right-handed alpha
Helix 32	AD5	G	113	117	Right-handed 310
Helix 33	AD6	H	38	50	Right-handed alpha
Helix 34	AD7	H	56	85	Right-handed alpha
Helix 35	AD8	H	91	103	Right-handed alpha
Helix 36	AD9	H	104	125	Right-handed alpha
Helix 37	AE1	K	250	256	Right-handed 310
Helix 38	AE2	K	755	759	Right-handed 310
Helix 39	AE3	K	985	990	Right-handed alpha
Helix 40	AE4	K	1044	1062	Right-handed alpha
Helix 41	AE5	K	1069	1075	Right-handed alpha
Helix 42	AE6	K	1091	1096	Right-handed alpha
Helix 43	AE7	K	1097	1100	Right-handed 310
Helix 44	AE8	K	1101	1109	Right-handed alpha
Helix 45	AE9	K	1125	1138	Right-handed alpha
Helix 46	AF1	L	68	70	Right-handed 310
Helix 47	AF2	L	71	79	Right-handed alpha
Helix 48	AF3	L	82	99	Right-handed alpha

There are 33 sheets in PDB entry 6R8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	B	81	82	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	B	46	47	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	G	101	103	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	D	89	90	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	D	54	55	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	F	98	99	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	F	81	82	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	44	first strand
Strand 2	H	89	90	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	79	first strand
Strand 2	H	54	55	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1004	1009	first strand
Strand 2	K	1025	1032	anti-parallel
Strand 3	K	1037	1043	anti-parallel
Strand 4	K	3	10	anti-parallel
Strand 5	K	1088	1090	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	17	21	first strand
Strand 2	K	30	35	anti-parallel
Strand 3	K	38	44	anti-parallel
Strand 4	K	49	56	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	61	67	first strand
Strand 2	K	76	81	anti-parallel
Strand 3	K	85	94	anti-parallel
Strand 4	K	97	107	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	121	124	first strand
Strand 2	K	130	134	anti-parallel
Strand 3	K	139	144	anti-parallel
Strand 4	K	155	158	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	164	169	first strand
Strand 2	K	177	184	anti-parallel
Strand 3	K	187	196	anti-parallel
Strand 4	K	201	204	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	164	169	first strand
Strand 2	K	177	184	anti-parallel
Strand 3	K	187	196	anti-parallel
Strand 4	K	210	211	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	218	221	first strand
Strand 2	K	229	232	anti-parallel
Strand 3	K	237	241	anti-parallel
Strand 4	K	244	248	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	258	263	first strand
Strand 2	K	270	275	anti-parallel
Strand 3	K	279	289	anti-parallel
Strand 4	K	295	307	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	313	318	first strand
Strand 2	K	321	325	anti-parallel
Strand 3	K	331	336	anti-parallel
Strand 4	K	347	353	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	361	365	first strand
Strand 2	K	374	379	anti-parallel
Strand 3	K	386	391	anti-parallel
Strand 4	K	711	716	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	720	727	first strand
Strand 2	K	732	743	anti-parallel
Strand 3	K	749	751	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	720	727	first strand
Strand 2	K	732	743	anti-parallel
Strand 3	K	786	795	anti-parallel
Strand 4	K	801	806	anti-parallel
Strand 5	K	762	763	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	811	819	first strand
Strand 2	K	828	835	anti-parallel
Strand 3	K	846	854	anti-parallel
Strand 4	K	857	866	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	872	876	first strand
Strand 2	K	879	884	anti-parallel
Strand 3	K	887	893	anti-parallel
Strand 4	K	899	905	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	911	917	first strand
Strand 2	K	920	925	anti-parallel
Strand 3	K	930	935	anti-parallel
Strand 4	K	942	948	anti-parallel
Strand 5	K	991	999	parallel
Strand 6	K	973	979	anti-parallel
Strand 7	K	964	969	anti-parallel
Strand 8	K	954	961	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1076	1077	first strand
Strand 2	K	1082	1083	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1113	1114	first strand
Strand 2	K	1122	1123	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	106	108	first strand
Strand 2	L	414	417	anti-parallel
Strand 3	L	407	411	anti-parallel
Strand 4	L	395	400	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	119	first strand
Strand 2	L	126	131	anti-parallel
Strand 3	L	136	140	anti-parallel
Strand 4	L	148	150	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	159	161	first strand
Strand 2	L	171	176	anti-parallel
Strand 3	L	182	185	anti-parallel
Strand 4	L	190	193	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	204	210	first strand
Strand 2	L	215	220	anti-parallel
Strand 3	L	225	229	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	245	250	first strand
Strand 2	L	258	262	anti-parallel
Strand 3	L	266	270	anti-parallel
Strand 4	L	283	286	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	291	295	first strand
Strand 2	L	302	307	anti-parallel
Strand 3	L	312	316	anti-parallel
Strand 4	L	325	326	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	343	344	first strand
Strand 2	L	350	354	anti-parallel
Strand 3	L	372	376	anti-parallel
Strand 4	L	382	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6R8Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6R8Y