Analysis of interatomic Contacts of Structural Units in PDB entry:
6R99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6R99 entry

There is 1 chain in PDB entry 6R99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 99ILE 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6R99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
188 195Right-handed alpha
Helix 2
AA2
A
220 226Right-handed alpha
Helix 3
AA3
A
238 255Right-handed alpha
Helix 4
AA4
A
279 294Right-handed alpha
Helix 5
AA5
A
321 325Right-handed alpha
Helix 6
AA6
A
330 342Right-handed alpha
Helix 7
AA7
A
343 345Right-handed 310
Helix 8
AA8
A
354 365Right-handed alpha
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There are 3 sheets in PDB entry 6R99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 217first strand
Strand 2
A
179 186anti-parallel
Strand 3
A
165 173anti-parallel
Strand 4
A
140 149anti-parallel
Strand 5
A
229 237anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 275first strand
Strand 2
A
262 264anti-parallel
Strand 3
A
304 312parallel
Strand 4
A
377 394anti-parallel
Strand 5
A
316 320anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 275first strand
Strand 2
A
262 264anti-parallel
Strand 3
A
304 312parallel
Strand 4
A
377 394anti-parallel
Strand 5
A
369 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il