Analysis of interatomic Contacts of Structural Units in PDB entry:
6R9R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6R9R entry

There are 5 chains in PDB entry 6R9R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 A 1 A 4
E
 A 1 A 2
B
 MET 1ALA 454
A
 MET 1ALA 454
C
 MET 1ASP 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 6R9R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
10 14Right-handed 310
Helix 2
AA2
B
30 40Right-handed alpha
Helix 3
AA3
B
58 73Right-handed alpha
Helix 4
AA4
B
129 144Right-handed alpha
Helix 5
AA5
B
157 170Right-handed alpha
Helix 6
AA6
B
195 214Right-handed alpha
Helix 7
AA7
B
216 220Right-handed 310
Helix 8
AA8
B
223 229Right-handed alpha
Helix 9
AA9
B
236 248Right-handed alpha
Helix 10
AB1
B
250 264Right-handed alpha
Helix 11
AB2
B
265 296Right-handed alpha
Helix 12
AB3
B
297 306Right-handed 310
Helix 13
AB4
B
310 318Right-handed alpha
Helix 14
AB5
B
319 324Right-handed 310
Helix 15
AB6
B
328 343Right-handed alpha
Helix 16
AB7
B
345 365Right-handed alpha
Helix 17
AB8
B
374 392Right-handed alpha
Helix 18
AB9
B
392 405Right-handed alpha
Helix 19
AC1
B
428 439Right-handed alpha
Helix 20
AC2
B
439 453Right-handed alpha
Helix 21
AC3
A
10 14Right-handed 310
Helix 22
AC4
A
30 40Right-handed alpha
Helix 23
AC5
A
58 73Right-handed alpha
Helix 24
AC6
A
80 86Right-handed alpha
Helix 25
AC7
A
129 145Right-handed alpha
Helix 26
AC8
A
157 170Right-handed alpha
Helix 27
AC9
A
195 214Right-handed alpha
Helix 28
AD1
A
216 220Right-handed 310
Helix 29
AD2
A
223 230Right-handed alpha
Helix 30
AD3
A
240 248Right-handed alpha
Helix 31
AD4
A
250 264Right-handed alpha
Helix 32
AD5
A
265 296Right-handed alpha
Helix 33
AD6
A
297 306Right-handed 310
Helix 34
AD7
A
310 318Right-handed alpha
Helix 35
AD8
A
319 324Right-handed 310
Helix 36
AD9
A
328 343Right-handed alpha
Helix 37
AE1
A
345 365Right-handed alpha
Helix 38
AE2
A
374 392Right-handed alpha
Helix 39
AE3
A
392 405Right-handed alpha
Helix 40
AE4
A
428 453Right-handed alpha
Helix 41
AE5
C
10 14Right-handed 310
Helix 42
AE6
C
30 40Right-handed alpha
Helix 43
AE7
C
58 74Right-handed alpha
Helix 44
AE8
C
78 85Right-handed alpha
Helix 45
AE9
C
129 145Right-handed alpha
Helix 46
AF1
C
157 170Right-handed alpha
Helix 47
AF2
C
195 214Right-handed alpha
Helix 48
AF3
C
216 220Right-handed 310
Helix 49
AF4
C
223 229Right-handed alpha
Helix 50
AF5
C
236 248Right-handed alpha
Helix 51
AF6
C
250 263Right-handed alpha
Helix 52
AF7
C
265 296Right-handed alpha
Helix 53
AF8
C
297 306Right-handed 310
Helix 54
AF9
C
310 318Right-handed alpha
Helix 55
AG1
C
319 324Right-handed 310
Helix 56
AG2
C
328 343Right-handed alpha
Helix 57
AG3
C
345 365Right-handed alpha
Helix 58
AG4
C
374 392Right-handed alpha
Helix 59
AG5
C
392 405Right-handed alpha
Helix 60
AG6
C
428 439Right-handed alpha
Helix 61
AG7
C
439 453Right-handed alpha
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There are 14 sheets in PDB entry 6R9R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 91first strand
Strand 2
B
43 49parallel
Strand 3
B
2 7parallel
Strand 4
B
148 152parallel
Strand 5
B
174 177parallel
Strand 6
B
193 194anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 28first strand
Strand 2
B
17 21anti-parallel
Strand 3
B
187 191parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 369first strand
Strand 2
A
414 416anti-parallel
Strand 3
A
421 422anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 422first strand
Strand 2
B
414 415anti-parallel
Strand 3
A
368 369anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
43 49parallel
Strand 3
A
2 7parallel
Strand 4
A
148 152parallel
Strand 5
A
174 177parallel
Strand 6
A
193 194anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
26 28anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
99 101parallel
Strand 3
A
120 121anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
125 126anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
115 117anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 91first strand
Strand 2
C
43 49parallel
Strand 3
C
2 7parallel
Strand 4
C
148 152parallel
Strand 5
C
174 177parallel
Strand 6
C
193 194anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 28first strand
Strand 2
C
17 21anti-parallel
Strand 3
C
189 191parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 54first strand
Strand 2
C
95 103parallel
Strand 3
C
106 107anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 54first strand
Strand 2
C
95 103parallel
Strand 3
C
121 126anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
414 415first strand
Strand 2
C
421 422anti-parallel
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