Analysis of interatomic Contacts of Structural Units in PDB entry:
6RAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RAD entry

There is 1 chain in PDB entry 6RAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 81ALA 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6RAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 92Right-handed 310
Helix 2
AA2
A
140 147Right-handed alpha
Helix 3
AA3
A
164 176Right-handed alpha
Helix 4
AA4
A
189 203Right-handed alpha
Helix 5
AA5
A
205 207Right-handed 310
Helix 6
AA6
A
219 240Right-handed alpha
Helix 7
AA7
A
250 265Right-handed alpha
Helix 8
AA8
A
276 287Right-handed alpha
Helix 9
AA9
A
312 320Right-handed alpha
Helix 10
AB1
A
329 336Right-handed alpha
Helix 11
AB2
A
350 355Right-handed alpha
Helix 12
AB3
A
356 376Right-handed alpha
Helix 13
AB4
A
392 408Right-handed alpha
Helix 14
AB5
A
416 433Right-handed alpha
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There are 3 sheets in PDB entry 6RAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 88first strand
Strand 2
A
114 118anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
94 96anti-parallel
Strand 3
A
209 215parallel
Strand 4
A
180 188parallel
Strand 5
A
243 249parallel
Strand 6
A
296 304parallel
Strand 7
A
154 159parallel
Strand 8
A
326 327parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
149 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il