Analysis of interatomic Contacts of Structural Units in PDB entry:
6RAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RAF entry

There are 3 chains in PDB entry 6RAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11GLN 598
B
 SER 5GLU 575
C
 GLN 3SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6RAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 21Right-handed alpha
Helix 2
AA2
A
22 24Right-handed 310
Helix 3
AA3
A
25 45Right-handed alpha
Helix 4
AA4
A
45 58Right-handed alpha
Helix 5
AA5
A
64 70Right-handed alpha
Helix 6
AA6
A
70 120Right-handed alpha
Helix 7
AA7
A
121 128Right-handed alpha
Helix 8
AA8
A
129 138Right-handed alpha
Helix 9
AA9
A
138 173Right-handed alpha
Helix 10
AB1
A
173 181Right-handed alpha
Helix 11
AB2
A
183 222Right-handed alpha
Helix 12
AB3
A
222 230Right-handed alpha
Helix 13
AB4
A
231 285Right-handed alpha
Helix 14
AB5
A
289 314Right-handed alpha
Helix 15
AB6
A
316 332Right-handed alpha
Helix 16
AB7
A
398 407Right-handed alpha
Helix 17
AB8
A
425 427Right-handed 310
Helix 18
AB9
A
428 435Right-handed alpha
Helix 19
AC1
A
450 455Right-handed alpha
Helix 20
AC2
A
462 473Right-handed alpha
Helix 21
AC3
A
475 482Right-handed alpha
Helix 22
AC4
A
498 514Right-handed alpha
Helix 23
AC5
A
529 544Right-handed alpha
Helix 24
AC6
A
555 562Right-handed alpha
Helix 25
AC7
A
578 586Right-handed alpha
Helix 26
AC8
A
587 598Right-handed alpha
Helix 27
AC9
B
6 18Right-handed alpha
Helix 28
AD1
B
20 54Right-handed alpha
Helix 29
AD2
B
57 105Right-handed alpha
Helix 30
AD3
B
106 111Right-handed alpha
Helix 31
AD4
B
114 133Right-handed alpha
Helix 32
AD5
B
134 158Right-handed alpha
Helix 33
AD6
B
158 168Right-handed alpha
Helix 34
AD7
B
168 207Right-handed alpha
Helix 35
AD8
B
207 214Right-handed alpha
Helix 36
AD9
B
216 270Right-handed alpha
Helix 37
AE1
B
274 317Right-handed alpha
Helix 38
AE2
B
331 335Right-handed 310
Helix 39
AE3
B
378 384Right-handed alpha
Helix 40
AE4
B
403 405Right-handed 310
Helix 41
AE5
B
406 413Right-handed alpha
Helix 42
AE6
B
427 433Right-handed alpha
Helix 43
AE7
B
440 451Right-handed alpha
Helix 44
AE8
B
453 460Right-handed alpha
Helix 45
AE9
B
462 466Right-handed 310
Helix 46
AF1
B
476 491Right-handed alpha
Helix 47
AF2
B
506 521Right-handed alpha
Helix 48
AF3
B
532 539Right-handed 310
Helix 49
AF4
B
555 563Right-handed alpha
Helix 50
AF5
B
564 575Right-handed alpha
Helix 51
AF6
C
87 91Right-handed 310
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There are 7 sheets in PDB entry 6RAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 383first strand
Strand 2
A
353 361anti-parallel
Strand 3
A
414 419anti-parallel
Strand 4
A
422 423anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 439first strand
Strand 2
A
518 522parallel
Strand 3
A
549 552parallel
Strand 4
A
388 393parallel
Strand 5
A
564 569parallel
Strand 6
A
572 577anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 449first strand
Strand 2
A
489 490anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 361first strand
Strand 2
B
339 348anti-parallel
Strand 3
B
392 397anti-parallel
Strand 4
B
400 401anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 417first strand
Strand 2
B
495 499parallel
Strand 3
B
525 529parallel
Strand 4
B
366 371parallel
Strand 5
B
541 545parallel
Strand 6
B
550 554anti-parallel
Strand 7
C
101 103anti-parallel
Strand 8
C
107 109anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 97anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
45 52anti-parallel
Strand 6
C
58 60anti-parallel
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