Analysis of interatomic Contacts of Structural Units in PDB entry:
6RAH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RAH entry

There are 3 chains in PDB entry 6RAH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11GLN 596
B
 SER 5LYS 574
C
 GLN 3SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6RAH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
25 45Right-handed alpha
Helix 3
AA3
A
45 59Right-handed alpha
Helix 4
AA4
A
65 120Right-handed alpha
Helix 5
AA5
A
121 128Right-handed alpha
Helix 6
AA6
A
129 138Right-handed alpha
Helix 7
AA7
A
140 151Right-handed alpha
Helix 8
AA8
A
151 173Right-handed alpha
Helix 9
AA9
A
173 222Right-handed alpha
Helix 10
AB1
A
222 230Right-handed alpha
Helix 11
AB2
A
231 283Right-handed alpha
Helix 12
AB3
A
289 332Right-handed alpha
Helix 13
AB4
A
398 407Right-handed alpha
Helix 14
AB5
A
425 427Right-handed 310
Helix 15
AB6
A
428 435Right-handed alpha
Helix 16
AB7
A
449 455Right-handed alpha
Helix 17
AB8
A
462 474Right-handed alpha
Helix 18
AB9
A
475 481Right-handed alpha
Helix 19
AC1
A
484 488Right-handed 310
Helix 20
AC2
A
498 513Right-handed alpha
Helix 21
AC3
A
529 544Right-handed alpha
Helix 22
AC4
A
578 586Right-handed alpha
Helix 23
AC5
A
586 594Right-handed alpha
Helix 24
AC6
B
6 19Right-handed alpha
Helix 25
AC7
B
20 55Right-handed alpha
Helix 26
AC8
B
57 103Right-handed alpha
Helix 27
AC9
B
106 113Right-handed alpha
Helix 28
AD1
B
114 133Right-handed alpha
Helix 29
AD2
B
134 158Right-handed alpha
Helix 30
AD3
B
158 167Right-handed alpha
Helix 31
AD4
B
168 207Right-handed alpha
Helix 32
AD5
B
207 214Right-handed alpha
Helix 33
AD6
B
216 264Right-handed alpha
Helix 34
AD7
B
264 269Right-handed alpha
Helix 35
AD8
B
274 317Right-handed alpha
Helix 36
AD9
B
376 383Right-handed alpha
Helix 37
AE1
B
406 413Right-handed alpha
Helix 38
AE2
B
427 433Right-handed alpha
Helix 39
AE3
B
440 451Right-handed alpha
Helix 40
AE4
B
453 458Right-handed alpha
Helix 41
AE5
B
462 466Right-handed 310
Helix 42
AE6
B
476 491Right-handed alpha
Helix 43
AE7
B
506 518Right-handed alpha
Helix 44
AE8
B
532 537Right-handed alpha
Helix 45
AE9
B
555 562Right-handed alpha
Helix 46
AF1
B
564 573Right-handed alpha
Helix 47
AF2
C
26 30Right-handed 310
Helix 48
AF3
C
87 91Right-handed 310
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There are 6 sheets in PDB entry 6RAH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 383first strand
Strand 2
A
353 361anti-parallel
Strand 3
A
414 419anti-parallel
Strand 4
A
422 423anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 439first strand
Strand 2
A
518 522parallel
Strand 3
A
549 552parallel
Strand 4
A
388 393parallel
Strand 5
A
564 569parallel
Strand 6
A
572 577anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 361first strand
Strand 2
B
339 348anti-parallel
Strand 3
B
392 397anti-parallel
Strand 4
B
400 401anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 417first strand
Strand 2
B
495 499parallel
Strand 3
B
525 529parallel
Strand 4
B
366 371parallel
Strand 5
B
541 546parallel
Strand 6
B
549 554anti-parallel
Strand 7
C
101 103anti-parallel
Strand 8
C
107 109anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 97anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
45 52anti-parallel
Strand 6
C
58 60anti-parallel
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