Analysis of interatomic Contacts of Structural Units in PDB entry:
6RAI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RAI entry

There are 3 chains in PDB entry 6RAI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11PHE 597
B
 GLY 3GLU 575
C
 GLN 3SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 6RAI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 23Right-handed alpha
Helix 2
AA2
A
24 28Right-handed 310
Helix 3
AA3
A
29 45Right-handed alpha
Helix 4
AA4
A
46 55Right-handed alpha
Helix 5
AA5
A
64 120Right-handed alpha
Helix 6
AA6
A
121 125Right-handed 310
Helix 7
AA7
A
129 149Right-handed alpha
Helix 8
AA8
A
151 173Right-handed alpha
Helix 9
AA9
A
173 182Right-handed alpha
Helix 10
AB1
A
183 222Right-handed alpha
Helix 11
AB2
A
222 229Right-handed alpha
Helix 12
AB3
A
231 285Right-handed alpha
Helix 13
AB4
A
289 304Right-handed alpha
Helix 14
AB5
A
304 313Right-handed alpha
Helix 15
AB6
A
313 332Right-handed alpha
Helix 16
AB7
A
398 407Right-handed alpha
Helix 17
AB8
A
425 427Right-handed 310
Helix 18
AB9
A
428 435Right-handed alpha
Helix 19
AC1
A
449 455Right-handed alpha
Helix 20
AC2
A
462 473Right-handed alpha
Helix 21
AC3
A
475 481Right-handed alpha
Helix 22
AC4
A
484 488Right-handed 310
Helix 23
AC5
A
498 512Right-handed alpha
Helix 24
AC6
A
529 544Right-handed alpha
Helix 25
AC7
A
578 586Right-handed alpha
Helix 26
AC8
A
586 597Right-handed alpha
Helix 27
AC9
B
6 18Right-handed alpha
Helix 28
AD1
B
20 39Right-handed alpha
Helix 29
AD2
B
40 53Right-handed alpha
Helix 30
AD3
B
57 103Right-handed alpha
Helix 31
AD4
B
106 112Right-handed alpha
Helix 32
AD5
B
114 124Right-handed alpha
Helix 33
AD6
B
126 133Right-handed alpha
Helix 34
AD7
B
134 156Right-handed alpha
Helix 35
AD8
B
158 167Right-handed alpha
Helix 36
AD9
B
168 207Right-handed alpha
Helix 37
AE1
B
207 214Right-handed alpha
Helix 38
AE2
B
216 243Right-handed alpha
Helix 39
AE3
B
244 270Right-handed alpha
Helix 40
AE4
B
274 294Right-handed alpha
Helix 41
AE5
B
294 317Right-handed alpha
Helix 42
AE6
B
331 335Right-handed 310
Helix 43
AE7
B
376 383Right-handed alpha
Helix 44
AE8
B
406 413Right-handed alpha
Helix 45
AE9
B
427 433Right-handed alpha
Helix 46
AF1
B
440 451Right-handed alpha
Helix 47
AF2
B
453 458Right-handed alpha
Helix 48
AF3
B
462 466Right-handed 310
Helix 49
AF4
B
469 473Right-handed 310
Helix 50
AF5
B
476 491Right-handed alpha
Helix 51
AF6
B
506 520Right-handed alpha
Helix 52
AF7
B
532 537Right-handed alpha
Helix 53
AF8
B
555 561Right-handed alpha
Helix 54
AF9
B
563 575Right-handed alpha
Helix 55
AG1
C
87 91Right-handed 310
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There are 6 sheets in PDB entry 6RAI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 382first strand
Strand 2
A
353 361anti-parallel
Strand 3
A
414 419anti-parallel
Strand 4
A
422 423anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 439first strand
Strand 2
A
518 522parallel
Strand 3
A
549 552parallel
Strand 4
A
388 393parallel
Strand 5
A
564 568parallel
Strand 6
A
575 577anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 361first strand
Strand 2
B
339 348anti-parallel
Strand 3
B
392 397anti-parallel
Strand 4
B
400 401anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 417first strand
Strand 2
B
495 499parallel
Strand 3
B
525 529parallel
Strand 4
B
366 371parallel
Strand 5
B
541 546parallel
Strand 6
B
549 554anti-parallel
Strand 7
C
101 103anti-parallel
Strand 8
C
107 109anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 97anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
45 52anti-parallel
Strand 6
C
58 60anti-parallel
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