Analysis of interatomic Contacts of Structural Units in PDB entry:
6RAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RAJ entry

There are 3 chains in PDB entry 6RAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11GLN 598
B
 ARG 4VAL 576
C
 GLN 3SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 6RAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
25 44Right-handed alpha
Helix 3
AA3
A
45 58Right-handed alpha
Helix 4
AA4
A
72 118Right-handed alpha
Helix 5
AA5
A
129 138Right-handed alpha
Helix 6
AA6
A
141 151Right-handed alpha
Helix 7
AA7
A
151 173Right-handed alpha
Helix 8
AA8
A
173 182Right-handed alpha
Helix 9
AA9
A
183 221Right-handed alpha
Helix 10
AB1
A
222 229Right-handed alpha
Helix 11
AB2
A
233 285Right-handed alpha
Helix 12
AB3
A
289 328Right-handed alpha
Helix 13
AB4
A
398 407Right-handed alpha
Helix 14
AB5
A
425 427Right-handed 310
Helix 15
AB6
A
428 433Right-handed alpha
Helix 16
AB7
A
450 455Right-handed alpha
Helix 17
AB8
A
462 473Right-handed alpha
Helix 18
AB9
A
475 480Right-handed alpha
Helix 19
AC1
A
484 487Right-handed 310
Helix 20
AC2
A
504 512Right-handed alpha
Helix 21
AC3
A
529 541Right-handed alpha
Helix 22
AC4
A
578 585Right-handed alpha
Helix 23
AC5
A
587 594Right-handed alpha
Helix 24
AC6
B
6 18Right-handed alpha
Helix 25
AC7
B
20 39Right-handed alpha
Helix 26
AC8
B
39 50Right-handed alpha
Helix 27
AC9
B
51 55Right-handed 310
Helix 28
AD1
B
58 78Right-handed alpha
Helix 29
AD2
B
78 103Right-handed alpha
Helix 30
AD3
B
114 122Right-handed alpha
Helix 31
AD4
B
128 134Right-handed alpha
Helix 32
AD5
B
134 150Right-handed alpha
Helix 33
AD6
B
151 158Right-handed alpha
Helix 34
AD7
B
160 202Right-handed alpha
Helix 35
AD8
B
202 207Right-handed alpha
Helix 36
AD9
B
207 214Right-handed alpha
Helix 37
AE1
B
216 225Right-handed alpha
Helix 38
AE2
B
225 271Right-handed alpha
Helix 39
AE3
B
274 287Right-handed alpha
Helix 40
AE4
B
289 294Right-handed alpha
Helix 41
AE5
B
294 313Right-handed alpha
Helix 42
AE6
B
331 335Right-handed 310
Helix 43
AE7
B
376 381Right-handed alpha
Helix 44
AE8
B
406 411Right-handed alpha
Helix 45
AE9
B
427 433Right-handed alpha
Helix 46
AF1
B
441 446Right-handed alpha
Helix 47
AF2
B
446 451Right-handed alpha
Helix 48
AF3
B
453 458Right-handed alpha
Helix 49
AF4
B
462 466Right-handed 310
Helix 50
AF5
B
478 491Right-handed alpha
Helix 51
AF6
B
508 517Right-handed alpha
Helix 52
AF7
B
555 562Right-handed alpha
Helix 53
AF8
B
563 571Right-handed alpha
Helix 54
AF9
C
87 91Right-handed 310
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There are 10 sheets in PDB entry 6RAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 379first strand
Strand 2
A
353 361anti-parallel
Strand 3
A
382 383anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 379first strand
Strand 2
A
353 361anti-parallel
Strand 3
A
414 419anti-parallel
Strand 4
A
422 423anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 551first strand
Strand 2
A
388 390parallel
Strand 3
A
564 568parallel
Strand 4
A
573 577anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 437first strand
Strand 2
A
518 519parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 449first strand
Strand 2
A
489 490anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 357first strand
Strand 2
B
339 348anti-parallel
Strand 3
B
360 361anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 357first strand
Strand 2
B
339 348anti-parallel
Strand 3
B
392 397anti-parallel
Strand 4
B
400 401anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 417first strand
Strand 2
B
495 499parallel
Strand 3
B
525 529parallel
Strand 4
B
366 371parallel
Strand 5
B
541 546parallel
Strand 6
B
549 554anti-parallel
Strand 7
C
101 103anti-parallel
Strand 8
C
107 109anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 97anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
45 52anti-parallel
Strand 6
C
58 60anti-parallel
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